View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_low_8 (Length: 573)
Name: NF16817_low_8
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_low_8 |
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| [»] scaffold0401 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Original strand, 16919686 - 16920230
Alignment:
| Q |
9 |
agcatagggacaatcaaagaaaaggtgaaaaatcgtttcctccgaaaccatgcaaagactgcaaactgaaggcaaatggcatcctctatcttttaggttc |
108 |
Q |
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| T |
16919686 |
agcataaggacaatcaaagaataggtgaaaagccgtttcctcagaaaccatgcaaagactgcaaactgaaggcaaatgacatcctctatcttttaggttc |
16919785 |
T |
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| Q |
109 |
tcatcaactgggattttatcgttcattaatctccatgcaagcagagattttgatagggggaatgtttggagaccaaatagttttggcccattgaatagac |
208 |
Q |
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| T |
16919786 |
tcatcaactgggattttatcgttcattaatctccatgcaagcagagattttgat-gggggaatgtttggagaccagatagttttggcccattgaatagac |
16919884 |
T |
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| Q |
209 |
tgggaaggggtgtctttaaacttataagcatccttaaaagataaactaccatttgttgtatgtgtccaaaccagatcatcttctatctcctgcataggga |
308 |
Q |
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| T |
16919885 |
tgggaaggggtgtctttaaactcataagcatccttaaaagataagcttccatttgttgtatgtgtccaaaccagatcatcttctatctcctgcataggga |
16919984 |
T |
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| Q |
309 |
tggaaactttatgaacaaggttccaaacatttggaaagtccgttgagaactcaggaggaaggttccagcaattgtcttgaatgtaatcactgactaaaat |
408 |
Q |
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| T |
16919985 |
tggtaactttgtgaacaagattccatacatctggaaagtcagttgagaactcaggaggaaggttccagcaattgtcatgaatgtaatcactgaccaaaat |
16920084 |
T |
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| Q |
409 |
actttgatcaacgacttcattagtcnnnnnnngattgaaaggttgaccacaccattgatcagaccaaaaatgaattttgttaccatcaccaagaagccag |
508 |
Q |
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| T |
16920085 |
actttgatcaacaacttcattagtcaaaaaaagattgagaggttgaccacaccattgatcagaccaaaaatgaattttgttgccatcaccaagaagccag |
16920184 |
T |
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| Q |
509 |
gtggaatgctccataatcacattgtattcattttttatgctagacc |
554 |
Q |
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| T |
16920185 |
gtggaatgctccataatcacattgtattcattttttatgctagacc |
16920230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0401 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0401
Description:
Target: scaffold0401; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 554
Target Start/End: Original strand, 13251 - 13350
Alignment:
| Q |
455 |
ccacaccattgatcagaccaaaaatgaattttgttaccatcaccaagaagccaggtggaatgctccataatcacattgtattcattttttatgctagacc |
554 |
Q |
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| T |
13251 |
ccacaccatttatcagaccaaaaatgaatattgtgaccatcaccaagaagccagcaagcatgctccatcatgacactatactcacttttgatgctagacc |
13350 |
T |
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