View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_high_11 (Length: 407)
Name: NF16818_high_11
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_11 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: scaffold0172 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 27811 - 28183
Alignment:
| Q |
18 |
ctttagatacttcaggtgatgaaacttctttctttcccacatcttggactatagctattagtcgtatcatctgttgcatttccaacgtagaatgtttcct |
117 |
Q |
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| T |
27811 |
ctttagatacttcaggtgatgaaacttctttctttcccacatcttggactatagttattaatcgtatcacctgttgcattttcaacatagaatgtttcct |
27910 |
T |
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| Q |
118 |
ctgttgtcttctcctttgtatcctggtgagatttgttgtcttgctatctcctatttttcatgaaggatcatcttttagggatatcatctccccattatcc |
217 |
Q |
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| T |
27911 |
ctgttgtcttctcctttgtatcctggtgagatttgttgtcttgctatctcctatttttcatgaaggatcatcttttagggatatcatctccccattatcc |
28010 |
T |
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| Q |
218 |
ttgaccgtaatcttcaaggaggttaggctttcttacatgtggtcttagtcggcctttcttcctcccattaggaaaaacatcctcacttatatgaggtaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28011 |
ttgaccgtaatcttcaaggaggttaggctttcttacatgtggtcttagtcggcctttcttcctcccattaggaaaaacatcctcacttatatgaggtaag |
28110 |
T |
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| Q |
318 |
atcagctctcaatttctcattgaatcaacctaacttttcccctagtcttaatggacgaatcaagaatctgaat |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
28111 |
atcagctctcaatttctcattgaatcaacctaacttttcccctggtcttaatggacgaatcgagaatctgaat |
28183 |
T |
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