View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_high_12 (Length: 407)
Name: NF16818_high_12
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 35773161 - 35772774
Alignment:
| Q |
1 |
atcagaccattcaaaaaaggaacatagagaagatatgattagtgtcaatgttcaattatttattaaacttatggaacaaatgcacatgacatgcaaatat |
100 |
Q |
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| T |
35773161 |
atcagaccattcaaaaaaggaacatagagaagatatgattagtgtcaatgttcaattatttattaaacttatggaacaaatgcacatgacatgcaaatat |
35773062 |
T |
|
| Q |
101 |
gtgttttgcatatacatacccttagggaattcttcttgttattatttggaggatgatcagaaggcagaggaggagtttttgaagttgcattataagaatg |
200 |
Q |
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| T |
35773061 |
gtgttttgcatatacatacccttagggaattcttcttgttattatttggaggatgatcagaaggcagaggaggagtttttgaagttgcattataagaatg |
35772962 |
T |
|
| Q |
201 |
atgattattgtgatcagtgatgagcctatactcatgcataatccaattagttttaactccttttggtggcttccctccataaaaaacaagtgctttctta |
300 |
Q |
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| T |
35772961 |
atgattattgtgatcagtgatgagcctgtactcatgcataatccaattagttttcactccttttggtggcttccctccataaaaaacaagtgctttctta |
35772862 |
T |
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| Q |
301 |
actccaactttctgattcccatcagatgttaatataggcttatcagttccagtagctttccaatacccagaagttgcagccctattag |
388 |
Q |
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| T |
35772861 |
actccaactttctgattcccatcagatgttaatataggcttatcagttccagtagctttccaatacccagaagttgcagccctattag |
35772774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 33762484 - 33762324
Alignment:
| Q |
223 |
agcctatactcatgcataatccaattagttttaactccttttggtggcttccctccataaaaaacaagtgctttcttaactccaactttctgattcccat |
322 |
Q |
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| T |
33762484 |
agcctatactcatgcatgatccaattggttttgatacctcttggtggtttcccaccatagaaaaccaaagctttcttcacaccaactttttgtgtcccac |
33762385 |
T |
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| Q |
323 |
cagatgttaatataggcttatcagttccagtagctttccaatacccagaagttgcagccct |
383 |
Q |
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|||| ||||| | ||||||||| || ||||| || |||||||| ||||||||||||||||| |
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| T |
33762384 |
cagaagttaaaacaggcttatcggtaccagttgccttccaataaccagaagttgcagccct |
33762324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 20701888 - 20701848
Alignment:
| Q |
228 |
atactcatgcataatccaattagttttaactccttttggtg |
268 |
Q |
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| T |
20701888 |
atactcatgcataatccaattagtttttgttccttttggtg |
20701848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 44371283 - 44371255
Alignment:
| Q |
235 |
tgcataatccaattagttttaactccttt |
263 |
Q |
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| T |
44371283 |
tgcataatccaattagttttaactccttt |
44371255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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