View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_high_13 (Length: 393)
Name: NF16818_high_13
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_13 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 451014 - 451406
Alignment:
| Q |
1 |
tttctaaactagatctaacattcttgatgggtttgattatctattttcttgtttgctttattgtaaaggaaattgtgacaaaaatgcatttatgagtaac |
100 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
451014 |
tttctaaactagatctaacattcttgatgagttcgattatctagtttcttgtttgctttattgtaaaggaaattgtgacaaaaatgcatttatgagtaac |
451113 |
T |
|
| Q |
101 |
ttatctatgagttaatctgtcctgtatttatttcttgcttacttaaattaggttatgataactcatcctttattaacttt-gtatctatttgggagtttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
451114 |
ttatctatgagttaatctgtcctgtatttatttcttgcttacttaaattaggttatgataactcatcctttattaactttggtatctatttgggagtttt |
451213 |
T |
|
| Q |
200 |
cttc----------aatcaagtacttattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactgttataaattttccatg |
289 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
451214 |
cttcattgtgcactaatcaagtacttattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttacttttataaattttccatg |
451313 |
T |
|
| Q |
290 |
acattatttattaggatttgaatcttctcatatagatcctgacgcaattttttgtttctttatataggacctagagaaagaaagaggatgatg |
382 |
Q |
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| T |
451314 |
acattatttattaggatttgaatcttctcatttagttcctgacacaattttttgtctctttatataggacctagagaaagaaagaggatgatg |
451406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 329
Target Start/End: Complemental strand, 4432791 - 4432677
Alignment:
| Q |
215 |
tattacttaatgtgtaaaccttagttttagagatagaaaatcaatttatcaatttactgttataaattttccatgacattatttattaggatttgaatct |
314 |
Q |
| |
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||||||||||| |||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| | || |||||||||||||||||| |||| |
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| T |
4432791 |
tattacttaatttgtagttctcagttttagagataaaaaatcaatttatcaatttacggttataaattttgctcgatattatttattaggatttggatct |
4432692 |
T |
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| Q |
315 |
tctcatatagatcct |
329 |
Q |
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|||||| ||| |||| |
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| T |
4432691 |
tctcatttagttcct |
4432677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 14493984 - 14494042
Alignment:
| Q |
262 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcat |
320 |
Q |
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| T |
14493984 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcat |
14494042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 15458 - 15400
Alignment:
| Q |
262 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcat |
320 |
Q |
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| T |
15458 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcat |
15400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 16101 - 16043
Alignment:
| Q |
262 |
atcaatttactgttataaattttccatgacattatttattaggatttgaatcttctcat |
320 |
Q |
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||||||||||| ||||||||||| ||| | |||||||||||||||||| |||||||||| |
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| T |
16101 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcat |
16043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9335345 - 9335304
Alignment:
| Q |
1 |
tttctaaactagatctaacattcttgatgggtttgattatct |
42 |
Q |
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|||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
9335345 |
tttctaaactagatgtaacattgttgatgagtttgattatct |
9335304 |
T |
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