View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_high_14 (Length: 340)
Name: NF16818_high_14
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 7129918 - 7129739
Alignment:
| Q |
74 |
ttaatttagaaagataatattcaagtttcaggtgtttgtgttgtttgttgagacggttggtactatttataggatcatggatgtggctatcttaggataa |
173 |
Q |
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| T |
7129918 |
ttaatttagaaagataatactcaagtttgaggtgtttgtgttgtttgctaagacggtttgga--ttttatagaatcgtgaatgtgtctatcataggataa |
7129821 |
T |
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| Q |
174 |
taacacgtgtacctacttttctttgttgctgaaaatgtatacgtgatttggaagaattgaaagattcatgatccatgttata |
255 |
Q |
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| T |
7129820 |
taacatgtgtacctacttttctttgttagtgaaaatgtatacgtgatttggaagaattgaaagattcatgatccatattata |
7129739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 7129951 - 7129917
Alignment:
| Q |
28 |
caaaggacaaaagttgaatttccatgatatttgtt |
62 |
Q |
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| T |
7129951 |
caaaggacgaaagttgaatttccatgatatttgtt |
7129917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 7129737 - 7129701
Alignment:
| Q |
274 |
tagttgaccatgcatgcatgaactaatattgtgtgtg |
310 |
Q |
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| T |
7129737 |
tagttgaccatgcatgcataaacttatattgtgtgtg |
7129701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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