View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_high_2 (Length: 710)
Name: NF16818_high_2
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 25 - 355
Target Start/End: Complemental strand, 29356453 - 29356123
Alignment:
| Q |
25 |
caaacagaaaacacaggaaatttgataatagatttcggtcaattgtgcccatgtctccgactatagagtggttgcatgcctactattcaaggttagggtt |
124 |
Q |
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| T |
29356453 |
caaacagaaaacacaggaaatttgataatagatttcggtcaattgtgtccacgtctccgactatagagtggttgcatgcctactattcaaggttagggtt |
29356354 |
T |
|
| Q |
125 |
aaatactgcggtttagcttacaagattacccttgaaacgctagctcggtcttatcaattgtaatttgttagttttcttaccttcatcattgtctggattt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29356353 |
aaatactgcggtttagcttacaagattacccttgaaacgctagctcggtcttatcaattgtaatttgttagttttcttaccttcatcattgtctggattt |
29356254 |
T |
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| Q |
225 |
tgtcttgaagaagacgatgtcttgctaaataagcaaggaaaacaggtcatgatggaatgatgtatcagagaagatgatgcaaatatttcaggcttcaaaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29356253 |
tgtcttgaagaagacgatgtcttgctaaataagcaaggaaaacaggtcatgatggaatgatgtatcagagaagatgatgcaaatatttcaggctttaaaa |
29356154 |
T |
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| Q |
325 |
aagcatactcacctcagatgaaggttgaagt |
355 |
Q |
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| T |
29356153 |
aagcatactcacctcagatgaaggttgaagt |
29356123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 400 - 624
Target Start/End: Complemental strand, 29356079 - 29355855
Alignment:
| Q |
400 |
tgtgatgaaggggttaaaattcaatgtaaataagtacgtaataagggaccatgaaggtatgtacacgcctacattagctttgaaatttcttactttcctt |
499 |
Q |
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| T |
29356079 |
tgtgatgaaggggttaaaattcaatgtaaataagtacgtaataagggaccatgaaggtatgtacacgcctacattagctttgaaatttctcactttcctt |
29355980 |
T |
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| Q |
500 |
tttcccttttcagaccatcgtgtctgcttcaaaaattctgcctcacctatcttcatactatatttctcgatttcataaggtttgccaatnnnnnnntcat |
599 |
Q |
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| T |
29355979 |
tttaccttttcagaccatcgtgtctgcttcaaaaattctgcctcacctatcttcatactatatttctcgatttcataaggtttgccaataaaaaaatcat |
29355880 |
T |
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| Q |
600 |
taagagtgtgagtttcataaaagtg |
624 |
Q |
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||| ||||||||||||||||||||| |
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| T |
29355879 |
taaaagtgtgagtttcataaaagtg |
29355855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 29362969 - 29362851
Alignment:
| Q |
175 |
ttatcaattgtaatttgttagttttcttaccttcatcattgtctggattttgtcttgaagaagacgatgtcttgctaaataagcaaggaaaacaggtcat |
274 |
Q |
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||||| |||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||| || || || |||| ||||||||||| |
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| T |
29362969 |
ttatctattgcaatttgttagttatcttaccttcatcgttgtctggatgctgtcttgaagaagacggtgtcttactgaacgagaaagggaaacaggtcat |
29362870 |
T |
|
| Q |
275 |
gatggaatgatgtatcaga |
293 |
Q |
| |
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|| |||||||||||||||| |
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| T |
29362869 |
gacggaatgatgtatcaga |
29362851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 29355839 - 29355790
Alignment:
| Q |
643 |
aagaactcaaaataacttaatgaaattgatattgaagaacatgagacttt |
692 |
Q |
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| T |
29355839 |
aagaactcaaaataatttactgaaattgatattgaagaacacgagacttt |
29355790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 25530364 - 25530430
Alignment:
| Q |
26 |
aaacagaaaacacaggaaatttgataatagatttcggtcaattgtgcccatgtctccgactatagag |
92 |
Q |
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|||||||||||||| || ||||||||| ||| ||||| ||||||| || ||| |||||||| ||||| |
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| T |
25530364 |
aaacagaaaacacacgatatttgataacagagttcggccaattgtccctatgcctccgactgtagag |
25530430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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