View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16818_high_21 (Length: 263)

Name: NF16818_high_21
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16818_high_21
NF16818_high_21
[»] chr2 (32 HSPs)
chr2 (37-140)||(42105828-42105931)
chr2 (37-136)||(37883588-37883687)
chr2 (37-139)||(25516429-25516531)
chr2 (37-138)||(25771380-25771481)
chr2 (48-140)||(3464905-3464997)
chr2 (37-124)||(41176797-41176884)
chr2 (48-138)||(3390378-3390468)
chr2 (75-140)||(27191411-27191476)
chr2 (75-140)||(27841225-27841290)
chr2 (37-138)||(40125324-40125425)
chr2 (39-140)||(44167785-44167886)
chr2 (201-249)||(42105719-42105767)
chr2 (53-136)||(6089844-6089927)
chr2 (38-140)||(5930359-5930461)
chr2 (47-138)||(10588983-10589074)
chr2 (37-140)||(43566812-43566913)
chr2 (68-139)||(29812692-29812763)
chr2 (91-140)||(7640432-7640481)
chr2 (37-138)||(27024217-27024318)
chr2 (37-117)||(16720916-16720996)
chr2 (88-138)||(15674052-15674102)
chr2 (58-112)||(44951458-44951512)
chr2 (76-140)||(19581079-19581143)
chr2 (37-125)||(25623136-25623224)
chr2 (75-139)||(36507904-36507968)
chr2 (201-235)||(9715525-9715559)
chr2 (75-124)||(41841922-41841971)
chr2 (88-140)||(16880035-16880087)
chr2 (87-123)||(19953369-19953405)
chr2 (202-238)||(25237304-25237340)
chr2 (79-139)||(26491280-26491340)
chr2 (8-36)||(42105883-42105911)
[»] chr3 (31 HSPs)
chr3 (37-140)||(20201134-20201237)
chr3 (37-140)||(20203316-20203419)
chr3 (37-140)||(50519725-50519828)
chr3 (37-140)||(22286825-22286928)
chr3 (37-140)||(35501835-35501937)
chr3 (37-138)||(1165474-1165575)
chr3 (41-140)||(22843990-22844089)
chr3 (37-140)||(21803465-21803568)
chr3 (37-140)||(41882484-41882587)
chr3 (37-111)||(47914688-47914762)
chr3 (37-140)||(20251586-20251690)
chr3 (37-138)||(43029618-43029719)
chr3 (64-120)||(37051586-37051642)
chr3 (37-140)||(25374146-25374248)
chr3 (48-125)||(42106057-42106134)
chr3 (55-140)||(53426757-53426842)
chr3 (37-110)||(29776782-29776855)
chr3 (37-138)||(40462073-40462174)
chr3 (37-125)||(43242745-43242834)
chr3 (41-125)||(33978011-33978095)
chr3 (77-136)||(1806540-1806599)
chr3 (37-107)||(27056000-27056070)
chr3 (41-119)||(43839613-43839691)
chr3 (90-140)||(45664217-45664267)
chr3 (87-140)||(1220291-1220344)
chr3 (87-140)||(4019587-4019639)
chr3 (72-125)||(25939567-25939618)
chr3 (77-118)||(50460169-50460210)
chr3 (77-137)||(913397-913457)
chr3 (40-114)||(27831053-27831124)
chr3 (50-110)||(39340159-39340219)
[»] scaffold0045 (1 HSPs)
scaffold0045 (48-140)||(9724-9816)
[»] chr6 (18 HSPs)
chr6 (36-140)||(16913262-16913366)
chr6 (52-138)||(12576556-12576642)
chr6 (37-125)||(7049182-7049270)
chr6 (37-140)||(32574388-32574491)
chr6 (63-137)||(4663899-4663973)
chr6 (48-133)||(8644191-8644276)
chr6 (91-140)||(19759777-19759826)
chr6 (41-140)||(548941-549038)
chr6 (37-125)||(32257919-32258006)
chr6 (76-138)||(10744553-10744615)
chr6 (75-140)||(32457619-32457684)
chr6 (37-140)||(20844942-20845046)
chr6 (97-139)||(32804289-32804331)
chr6 (75-140)||(891561-891626)
chr6 (51-140)||(15128225-15128313)
chr6 (86-119)||(31747944-31747977)
chr6 (85-122)||(34020601-34020638)
chr6 (37-105)||(8633275-8633343)
[»] chr1 (23 HSPs)
chr1 (42-124)||(22032182-22032264)
chr1 (37-138)||(22344990-22345091)
chr1 (37-125)||(37685187-37685274)
chr1 (37-125)||(37700244-37700331)
chr1 (48-138)||(44514068-44514158)
chr1 (37-118)||(14717340-14717421)
chr1 (84-140)||(12148124-12148180)
chr1 (37-125)||(30853874-30853962)
chr1 (88-140)||(52839409-52839461)
chr1 (89-140)||(5832220-5832271)
chr1 (97-140)||(44562825-44562868)
chr1 (75-125)||(33703600-33703650)
chr1 (38-140)||(46589109-46589213)
chr1 (87-140)||(6212962-6213015)
chr1 (78-140)||(52839497-52839559)
chr1 (78-139)||(17579744-17579805)
chr1 (201-234)||(35077872-35077905)
chr1 (87-140)||(35077966-35078019)
chr1 (64-125)||(38646546-38646607)
chr1 (84-125)||(48655157-48655198)
chr1 (92-140)||(630861-630909)
chr1 (100-136)||(13691838-13691874)
chr1 (37-113)||(26199532-26199607)
[»] chr7 (24 HSPs)
chr7 (39-140)||(47749671-47749772)
chr7 (48-140)||(24470341-24470433)
chr7 (48-140)||(24475289-24475381)
chr7 (39-139)||(35141830-35141930)
chr7 (37-140)||(40775202-40775305)
chr7 (37-138)||(49166862-49166963)
chr7 (37-138)||(28015291-28015392)
chr7 (37-140)||(8611698-8611801)
chr7 (37-140)||(23732469-23732572)
chr7 (51-136)||(38649438-38649523)
chr7 (59-123)||(21329388-21329452)
chr7 (72-136)||(29804756-29804820)
chr7 (37-136)||(10250561-10250659)
chr7 (37-115)||(37399551-37399629)
chr7 (58-135)||(34595731-34595808)
chr7 (87-138)||(16263372-16263423)
chr7 (97-140)||(43807226-43807269)
chr7 (38-121)||(46918339-46918421)
chr7 (84-125)||(29804979-29805020)
chr7 (201-238)||(32312666-32312703)
chr7 (37-137)||(33530547-33530645)
chr7 (64-136)||(14734130-14734202)
chr7 (75-140)||(25855296-25855365)
chr7 (37-125)||(35135274-35135362)
[»] chr4 (30 HSPs)
chr4 (37-138)||(9661788-9661889)
chr4 (37-125)||(29577176-29577264)
chr4 (37-140)||(28588496-28588599)
chr4 (37-140)||(1646017-1646120)
chr4 (37-136)||(1657650-1657749)
chr4 (37-140)||(54420788-54420891)
chr4 (48-138)||(4634229-4634319)
chr4 (48-140)||(16991818-16991910)
chr4 (75-138)||(14542590-14542653)
chr4 (75-137)||(43156749-43156812)
chr4 (78-125)||(46729010-46729057)
chr4 (84-136)||(3673605-3673657)
chr4 (77-140)||(3169015-3169078)
chr4 (85-135)||(34115733-34115783)
chr4 (39-93)||(38434558-38434612)
chr4 (37-102)||(9474623-9474688)
chr4 (91-140)||(23067924-23067973)
chr4 (58-139)||(35338351-35338431)
chr4 (87-140)||(41486560-41486613)
chr4 (201-238)||(43156875-43156912)
chr4 (91-140)||(52555797-52555846)
chr4 (37-140)||(38546188-38546289)
chr4 (52-136)||(51646043-51646127)
chr4 (37-138)||(7242847-7242945)
chr4 (97-139)||(4959652-4959694)
chr4 (75-140)||(6408412-6408478)
chr4 (201-238)||(4959551-4959588)
chr4 (201-238)||(27651918-27651955)
chr4 (201-238)||(38434698-38434735)
chr4 (97-125)||(42972033-42972061)
[»] chr8 (24 HSPs)
chr8 (39-140)||(9269958-9270059)
chr8 (37-140)||(36545857-36545959)
chr8 (58-140)||(10042717-10042799)
chr8 (37-140)||(9992600-9992703)
chr8 (75-140)||(31874057-31874122)
chr8 (48-136)||(37658912-37659000)
chr8 (75-126)||(31147890-31147941)
chr8 (75-138)||(44295289-44295352)
chr8 (48-138)||(15665485-15665575)
chr8 (76-138)||(16937417-16937479)
chr8 (91-140)||(8054884-8054933)
chr8 (64-120)||(14327441-14327497)
chr8 (37-125)||(23766677-23766765)
chr8 (48-138)||(32256799-32256890)
chr8 (63-125)||(32061755-32061817)
chr8 (39-117)||(37719788-37719866)
chr8 (63-136)||(18190924-18190996)
chr8 (202-238)||(10042872-10042908)
chr8 (78-140)||(284551-284613)
chr8 (78-140)||(631264-631326)
chr8 (78-140)||(817076-817138)
chr8 (201-238)||(15827109-15827146)
chr8 (75-140)||(26937498-26937563)
chr8 (37-125)||(14115884-14115971)
[»] chr5 (21 HSPs)
chr5 (37-138)||(2415335-2415436)
chr5 (37-138)||(31645764-31645865)
chr5 (37-138)||(33486648-33486749)
chr5 (39-138)||(6887256-6887355)
chr5 (37-140)||(34893992-34894095)
chr5 (52-138)||(41554436-41554522)
chr5 (48-140)||(37424938-37425031)
chr5 (56-140)||(6647989-6648073)
chr5 (37-138)||(18472803-18472901)
chr5 (37-140)||(28618539-28618642)
chr5 (41-125)||(41063487-41063569)
chr5 (89-138)||(29310427-29310476)
chr5 (37-140)||(4070490-4070592)
chr5 (77-137)||(8812231-8812291)
chr5 (75-139)||(19646118-19646182)
chr5 (37-125)||(41357973-41358061)
chr5 (201-238)||(13007791-13007828)
chr5 (201-238)||(13079244-13079281)
chr5 (201-238)||(13080252-13080289)
chr5 (201-238)||(20270813-20270850)
chr5 (201-238)||(22397526-22397563)
[»] scaffold0018 (1 HSPs)
scaffold0018 (201-236)||(137038-137073)
[»] scaffold0012 (1 HSPs)
scaffold0012 (37-115)||(244569-244647)
[»] scaffold0011 (1 HSPs)
scaffold0011 (48-139)||(10965-11056)
[»] scaffold1294 (1 HSPs)
scaffold1294 (75-140)||(753-818)
[»] scaffold0340 (1 HSPs)
scaffold0340 (84-125)||(11868-11909)
[»] scaffold0665 (1 HSPs)
scaffold0665 (37-125)||(1183-1270)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 42105931 - 42105828
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  42105931 tctctctcgttagccgtcacaaaaaccctaatttattttccttcatccaccaaagaggggtgctttagggtcaatttttgacccaaaatcaccactctaa 42105832  T
Q  137 ctcg 140  Q
    ||||    
T  42105831 ctcg 42105828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 37883588 - 37883687
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| |||||| |||||| || |||||||| |||||||||||| ||||||||||||||||||| | ||||||| ||| ||||||    
T  37883588 tctctcttgtgagccgtcactaaaatcataatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttaatccaaaatcacccctctaa 37883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 25516429 - 25516531
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| |||||||||| ||| |||| ||| || |||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||    
T  25516429 tctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctctaa 25516528  T
Q  137 ctc 139  Q
    |||    
T  25516529 ctc 25516531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 25771380 - 25771481
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || ||||||||| |||| |||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  25771380 tctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 25771479  T
Q  137 ct 138  Q
    ||    
T  25771480 ct 25771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 3464905 - 3464997
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||||| |||  ||||||| || |||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||    
T  3464905 agccgtcacacaaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcaccacactaactcg 3464997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 41176797 - 41176884
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaa 124  Q
    |||||| ||| |||||||||| ||| |||| ||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  41176797 tctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaa 41176884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 3390378 - 3390468
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||||| |||| |||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  3390378 agccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 3390468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 27191476 - 27191411
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  27191476 tccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcg 27191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 27841290 - 27841225
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  27841290 tccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcg 27841225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 40125324 - 40125425
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||  |||| | || ||| || |||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||    
T  40125324 tctctcttgtgagccgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctctaa 40125423  T
Q  137 ct 138  Q
    ||    
T  40125424 ct 40125425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 44167886 - 44167785
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||||||| |||||||||| ||  |||| ||| || |||||||| |||||||||||| |||| || ||||||||||||||||||||| ||| ||||||||    
T  44167886 tctcttgtgagccgtcacacaagccctagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctctaact 44167787  T
Q  139 cg 140  Q
    ||    
T  44167786 cg 44167785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 42105767 - 42105719
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgtatgttgtttgt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105767 gtgatttcgtcgtcttagtacaacgttgttttgttcgtatgttgtttgt 42105719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 6089844 - 6089927
Alignment:
Q  53 tcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||||| |||||||| || |||||||| || ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||    
T  6089844 tcacaaaaaccctaatttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaa 6089927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 5930359 - 5930461
Alignment:
Q  38 ctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaac 137  Q
    ||||||||  || |||||| ||||||||||| | || |||||||| |||||||||| | ||||||||||| ||||||||||||||||| | | |||||||    
T  5930359 ctctcttggaagtcgtcaccaaaatcctaatatcttctccttcatccaccaaagagaggtgatttagggttaatttttgacccaaaatcatccctctaac 5930458  T
Q  138 tcg 140  Q
    |||    
T  5930459 tcg 5930461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 10588983 - 10589074
Alignment:
Q  47 tagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||| ||||| ||||||||| ||| ||   |||||| ||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  10588983 tagcggtcaccaaaatcctagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 10589074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 43566812 - 43566913
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| |||||||||| ||| | || ||| || |||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||    
T  43566812 tctctcctgtgagccgtcacacaaaccatagtttcttctccttcatccaccaaagaggggtga-ttagggtcaatttttgacccaaaatcacc-ctctaa 43566909  T
Q  137 ctcg 140  Q
    ||||    
T  43566910 ctcg 43566913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 29812763 - 29812692
Alignment:
Q  68 tttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||||| ||||||| || ||||||| | |||||||||||||||||||||| |||||| ||| |||||||||    
T  29812763 tttatttaccttcatccatcaaagagaggtgatttagggtcaatttttgacacaaaatcacccctctaactc 29812692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 7640481 - 7640432
Alignment:
Q  91 gagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 7640432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 27024318 - 27024217
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || || |||||| ||||  ||| ||| || |||||||| || |||||| || ||||||||||||| ||||||||||||||| ||| ||||||    
T  27024318 tctctctagtgagtcgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctctaa 27024219  T
Q  137 ct 138  Q
    ||    
T  27024218 ct 27024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 16720996 - 16720916
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttga 117  Q
    |||||||||  ||||||||| ||||||||| |||  |||||||||| || || |||| | |||||||||||||||||||||    
T  16720996 tctctcttgggagccgtcaccaaaatcctagttttctttccttcatccatcagagagaggtgatttagggtcaatttttga 16720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 15674102 - 15674052
Alignment:
Q  88 aaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||||||| ||||||||||||||||||||||||||||| ||  ||||||||    
T  15674102 aaagaggggtgatttagggtcaatttttgacccaaaatcactcctctaact 15674052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 44951458 - 44951512
Alignment:
Q  58 aaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatt 112  Q
    ||||||||| ||| || |||||||| |||||||||||| ||||||||||||||||    
T  44951458 aaaatcctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatt 44951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 19581143 - 19581079
Alignment:
Q  76 ccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||| ||| |||||||| |||||| |||||||||||| || |||||| ||| ||||||||||    
T  19581143 ccttcatccactaaagaggggtgattttgggtcaatttttaacacaaaatcacccctctaactcg 19581079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 25623224 - 25623136
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||| ||| ||||| ||| |||| |||| ||| |||| |||||| || ||||||||| |||||||   |||||||||||||||||||    
T  25623224 tctctcctgtgagccgccaccaaaaccctagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaat 25623136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 36507904 - 36507968
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    |||||||| |||||||||  | ||| ||||||||||||||||||||||||| ||| |||| ||||    
T  36507904 tccttcatccaccaaagaatggtgacttagggtcaatttttgacccaaaatcacctctctgactc 36507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 9715559 - 9715525
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgtt 235  Q
    |||||||||||||||||||||||||||| ||||||    
T  9715559 gtgatttcgtcgtcttagtacaacgttgatttgtt 9715525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 41841922 - 41841971
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaa 124  Q
    |||||||| || || |||||| ||||||| ||||||||||||||||||||    
T  41841922 tccttcatccatcatagagggttgatttatggtcaatttttgacccaaaa 41841971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 16880087 - 16880035
Alignment:
Q  88 aaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||||||  ||||||||||||||||||||| ||| |||| |||||    
T  16880087 aaagaggggtgatttttggtcaatttttgacccaaaatcacccctctcactcg 16880035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 19953369 - 19953405
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaa 123  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  19953369 caaagaggggtgatttatggtcaatttttgacccaaa 19953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 25237340 - 25237304
Alignment:
Q  202 tgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    |||||||||||||||||| | ||||||||||||||||    
T  25237340 tgatttcgtcgtcttagtgcgacgttgttttgttcgt 25237304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 26491280 - 26491340
Alignment:
Q  79 tcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    |||| |||||||||||| | ||||| | ||||||||||||||||||| ||| || ||||||    
T  26491280 tcatccaccaaagaggggtaatttaagttcaatttttgacccaaaatcacccctttaactc 26491340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 42105911 - 42105883
Alignment:
Q  8 aaaaaccctaatttattttccttcatcca 36  Q
    |||||||||||||||||||||||||||||    
T  42105911 aaaaaccctaatttattttccttcatcca 42105883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 20201237 - 20201134
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| |||| |||| ||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  20201237 tctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 20201138  T
Q  137 ctcg 140  Q
    ||||    
T  20201137 ctcg 20201134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 20203419 - 20203316
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| |||| |||| ||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  20203419 tctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 20203320  T
Q  137 ctcg 140  Q
    ||||    
T  20203319 ctcg 20203316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 50519725 - 50519828
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| |||||||||| ||| |||| ||| || |||||||| ||||||||| || ||||||||||||||||||||||||||||| ||| ||||||    
T  50519725 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctctaa 50519824  T
Q  137 ctcg 140  Q
    ||||    
T  50519825 ctcg 50519828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 22286928 - 22286825
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| |||||||||| ||  |||| ||| || |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  22286928 tctctcctgtgagccgtcacacaagccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattacccctctaa 22286829  T
Q  137 ctcg 140  Q
    ||||    
T  22286828 ctcg 22286825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 35501937 - 35501835
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| |||||||||  |||||||| ||| || |||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||    
T  35501937 tctctcttgtgagccgtcaccgaaatcctagtttcttctccttcatccaccaaagaggg-tgatttagggttaatttttgacccaaaatcacccctctaa 35501839  T
Q  137 ctcg 140  Q
    ||||    
T  35501838 ctcg 35501835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 1165575 - 1165474
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || ||||||||| |||| |||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  1165575 tctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 1165476  T
Q  137 ct 138  Q
    ||    
T  1165475 ct 1165474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 22843990 - 22844089
Alignment:
Q  41 tcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| | ||||||| |||| |||| |||||| |||||||| || ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  22843990 tcttgtgaaccgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcacccctctaactcg 22844089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 21803465 - 21803568
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| |||| |||| ||| || ||||||||  ||||||||||  ||||| || |||||||||||||||||||| ||| ||||||    
T  21803465 tctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttttgacccaaaatcacccctctaa 21803564  T
Q  137 ctcg 140  Q
    ||||    
T  21803565 ctcg 21803568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 41882587 - 41882484
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| |||||| ||| ||  |||| ||| || |||||||| || ||||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  41882587 tctctcctgtgagccgttacacaagccctagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctctaa 41882488  T
Q  137 ctcg 140  Q
    ||||    
T  41882487 ctcg 41882484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 47914762 - 47914688
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaat 111  Q
    ||||| |||| |||||||||| |||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  47914762 tctcttttgtgagccgtcacagaaatcctaatttcttctccttcatccaccaaagaggggtgatttagggtcaat 47914688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 20251586 - 20251690
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtc-aatttttgacccaaaattaccactcta 135  Q
    |||||||||| |||||||||  ||| |||| |||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||||||| |||  ||||    
T  20251586 tctctcttgtgagccgtcaccgaaaccctagtttattctccttcatccaccaaagaggggtgatttagggtcgatttttttacccaaaatcacccttcta 20251685  T
Q  136 actcg 140  Q
    |||||    
T  20251686 actcg 20251690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 43029618 - 43029719
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || || |||||| |||| |||| ||| || |||||||| || ||||||||| ||||||||| ||| ||||||||||||||| ||| ||||||    
T  43029618 tctctctagtgagtcgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctctaa 43029717  T
Q  137 ct 138  Q
    ||    
T  43029718 ct 43029719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 37051586 - 37051642
Alignment:
Q  64 ctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgaccc 120  Q
    ||||||| || || ||||| |||||||||||||||||||||||||||||||||||||    
T  37051586 ctaatttcttctctttcatccaccaaagagggatgatttagggtcaatttttgaccc 37051642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 25374248 - 25374146
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||| |||| ||||||||| ||||  ||| ||| ||||||||||| ||| ||||| || ||||||||||| ||||||||||| ||||| ||| ||||||    
T  25374248 tctcttttgtgagccgtcactaaaactctagtttcttttccttcattcac-aaagaagggtgatttagggttaatttttgacctaaaatcacccctctaa 25374150  T
Q  137 ctcg 140  Q
    ||||    
T  25374149 ctcg 25374146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 42106057 - 42106134
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    ||||||||| |||| |||| ||| ||   |||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  42106057 agccgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaat 42106134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 53426757 - 53426842
Alignment:
Q  55 acaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||  ||| ||| ||||| ||||| || |||||| |||||||||||||||||||||| || |||||| ||| ||||||||||    
T  53426757 acaaaaactctagtttcttttctttcatccatcaaagatggatgatttagggtcaattttttacgcaaaatcacccctctaactcg 53426842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 29776855 - 29776782
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaa 110  Q
    |||||||||| | ||||||| |||| | || ||| || |||||||| |||||||||||| ||||||||||||||    
T  29776855 tctctcttgtgaaccgtcactaaaaccttagttttttctccttcatccaccaaagaggggtgatttagggtcaa 29776782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 40462174 - 40462073
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||| |||| || |||| | |||| |||| ||| || || ||||| |||||||||| | |||||||| ||||| |||||||||||||| ||| ||||||    
T  40462174 tctcttttgtgagacgtcgccaaaaccctagtttcttctctttcatccaccaaagagtggtgatttagagtcaaattttgacccaaaatcacccctctaa 40462075  T
Q  137 ct 138  Q
    ||    
T  40462074 ct 40462073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 43242745 - 43242834
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattt-tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| |||||||||| |||||||| |||  || |||||||| || |||| | || ||||||||||||| |||||||| ||||||    
T  43242745 tctctcttgtgagccgtcacataaatcctagttttcttctccttcattcatcaaataagggtgatttagggtcagtttttgacacaaaat 43242834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 33978095 - 33978011
Alignment:
Q  41 tcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||| ||||||||||||||| ||| ||| |  |||||||| ||| ||| |  | ||||||| |||||||||||||||||||||    
T  33978095 tcttgtgagccgtcacaaaaattctagtttctcctccttcatccacaaaaaaatggtgatttaaggtcaatttttgacccaaaat 33978011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 1806599 - 1806540
Alignment:
Q  77 cttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| |||||||||||| || |||||||||||||||||| || |||| ||| ||||||    
T  1806599 cttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcacccctctaa 1806540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27056070 - 27056000
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggt 107  Q
    ||||| |||| ||||||||| |||| |||||||| || |||||||| ||||| ||| || |||||||||||    
T  27056070 tctcttttgtgagccgtcaccaaaaccctaattttttctccttcatccaccagagaagggtgatttagggt 27056000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 43839691 - 43839613
Alignment:
Q  41 tcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacc 119  Q
    |||||| || |||| | |||| |||| ||| || |||||||| ||| ||||| || |||||||||||||||||||||||    
T  43839691 tcttgtcagtcgtcgccaaaaccctagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttgacc 43839613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 45664217 - 45664267
Alignment:
Q  90 agagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| ||||||||| |||| |||||||||||||| ||| ||||||||||    
T  45664217 agaggggtgatttaggatcaaattttgacccaaaatcacccctctaactcg 45664267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 1220344 - 1220291
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||| ||||||||| |||||||||||  |||||| ||| ||||||||||    
T  1220344 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg 1220291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 4019587 - 4019639
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||| ||||||||||    
T  4019587 caaagaggggtgatttagggtcaa-ttttgactcaaaatcacctctctaactcg 4019639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 25939618 - 25939567
Alignment:
Q  72 ttttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    ||||||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  25939618 ttttccttcatccatcaaa-aggg-tgatttagggtcaatttttgacccaaaat 25939567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 50460169 - 50460210
Alignment:
Q  77 cttcatgcaccaaagagggatgatttagggtcaatttttgac 118  Q
    |||||| || ||||||||||||||||| ||||||||||||||    
T  50460169 cttcatccatcaaagagggatgatttaaggtcaatttttgac 50460210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 913457 - 913397
Alignment:
Q  77 cttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaac 137  Q
    |||||| |||||||||||| | ||| |  |||||||||||||||||||| ||| |||||||    
T  913457 cttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcacccctctaac 913397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 27831053 - 27831124
Alignment:
Q  40 ctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttt 114  Q
    ||||||| |||||||||  ||| |||||||| ||   |||||| |||||||||||| |||||| |||||||||||    
T  27831053 ctcttgtgagccgtcaccgaaaccctaatttctt---cttcatccaccaaagaggggtgatttggggtcaatttt 27831124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 39340159 - 39340219
Alignment:
Q  50 ccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaa 110  Q
    ||||||| ||||||| | ||| ||||||||| | || |||| |||||||||||||||||||    
T  39340159 ccgtcaccaaaatcccactttcttttccttcgttcatcaaaaagggatgatttagggtcaa 39340219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 9816 - 9724
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||||||||| |||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  9816 agccgtcacaaaaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcactcctctaactcg 9724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 16913262 - 16913366
Alignment:
Q  36 atctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactcta 135  Q
    |||||| |||| ||||||||| |||| |||| ||| || |||||||| |||||||||||| |||||||||||||||||||||||| |||| ||| |||||    
T  16913262 atctcttttgtgagccgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcacccctcta 16913361  T
Q  136 actcg 140  Q
    |||||    
T  16913362 actcg 16913366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 12576642 - 12576556
Alignment:
Q  52 gtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||||||||||| ||| ||||||||||| ||| |||||||| |||||||||||||||||||||||| |||| ||| ||||||||    
T  12576642 gtcacaaaaatcctagtttcttttccttcatccacgaaagaggggtgatttagggtcaatttttgaccctaaatcacccctctaact 12576556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 7049182 - 7049270
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| ||||||||| |||| | |||||| || |||||||| |||||||||||| |||||||||||||| ||||||| ||||||    
T  7049182 tctctcttgtgagccgtcaccaaaaccataattttttctccttcatccaccaaagaggggtgatttagggtcaacttttgactcaaaat 7049270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 32574388 - 32574491
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| |||| |||| ||| || |||||||| ||||||| |  | || ||||| |||||||||||||||||||||| | ||||||    
T  32574388 tctctcttgtgagccgtcaccaaaaccctattttcttctccttcatccaccaaatataggtgttttagagtcaatttttgacccaaaattaaccctctaa 32574487  T
Q  137 ctcg 140  Q
    ||||    
T  32574488 ctcg 32574491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 4663973 - 4663899
Alignment:
Q  63 cctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaac 137  Q
    |||||||| || |||||||| |||||||||||| |||||  |||||||||||||||||||||| ||| |||||||    
T  4663973 cctaatttcttctccttcatccaccaaagaggggtgattgtgggtcaatttttgacccaaaatcacccctctaac 4663899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 8644191 - 8644276
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactc 133  Q
    ||||||||| |||| |||| |||  |||||||||| || |||| | || ||||||||||||||||||||||| ||||| |||||||    
T  8644191 agccgtcaccaaaaccctagtttcatttccttcatccatcaaaaatgggtgatttagggtcaatttttgaccaaaaatcaccactc 8644276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 19759777 - 19759826
Alignment:
Q  91 gagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 19759826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 549038 - 548941
Alignment:
Q  41 tcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| ||||||||  ||||||||||||| || |||||||| ||| |  ||||  |||| || ||||||||||||||||||||| ||| ||||||||||    
T  549038 tcttgtgagccgtcatcaaaatcctaattttttctccttcatccacta--gaggagtgatataaggtcaatttttgacccaaaatcacccctctaactcg 548941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 32257919 - 32258006
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| || |||||| ||||||||| ||| || || ||||| || |||||||||||||| || |||||||||||||||| ||||    
T  32257919 tctctcttgtgagtcgtcactaaaatcctagtttcttctc-ttcatccatcaaagagggatgatgtaaggtcaatttttgacccgaaat 32258006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 10744553 - 10744615
Alignment:
Q  76 ccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||| ||||||||| || |||||||||||||| |||||||||||||| ||  ||||||||    
T  10744553 ccttcatccaccaaagatgggtgatttagggtcaacttttgacccaaaatcactcctctaact 10744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 32457619 - 32457684
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||  || |||||||| |||||||| |||||||||||||||||||| |||  |||||||||    
T  32457619 tccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcacccatctaactcg 32457684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 20844942 - 20845046
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagaggga-tgatttagggtcaatttttgacccaaaattaccactcta 135  Q
    |||||||||| ||||||||| |||| | || ||| || ||||| ||  |||||||||||  | ||| | ||||||||||||||||||||| ||| |||||    
T  20844942 tctctcttgtgagccgtcaccaaaaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgacccaaaatcacccctcta 20845041  T
Q  136 actcg 140  Q
    |||||    
T  20845042 actcg 20845046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 32804289 - 32804331
Alignment:
Q  97 tgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||||||||||||||||||||||||||| |||  ||||||||    
T  32804289 tgatttagggtcaatttttgacccaaaatcacccatctaactc 32804331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 891561 - 891626
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||  |||||| | ||||| |||||| |||||||||||||||||||| || |||||||    
T  891561 tccttcatccattaaagagaggtgattaagggtcgatttttgacccaaaattacccctataactcg 891626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 15128313 - 15128225
Alignment:
Q  51 cgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| |||||| || ||| || | |||||| || ||||||  ||||||||||| |||||||||| |||||||| ||| ||||||||||    
T  15128313 cgtcaccaaaatcttagtttcttctacttcatccatcaaagatagatgatttagg-tcaatttttgtcccaaaatcacccctctaactcg 15128225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 31747944 - 31747977
Alignment:
Q  86 ccaaagagggatgatttagggtcaatttttgacc 119  Q
    |||||||| |||||||||||||||||||||||||    
T  31747944 ccaaagagagatgatttagggtcaatttttgacc 31747977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 34020601 - 34020638
Alignment:
Q  85 accaaagagggatgatttagggtcaatttttgacccaa 122  Q
    ||||||||||| || |||||||||||||||||||||||    
T  34020601 accaaagaggggtggtttagggtcaatttttgacccaa 34020638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 8633343 - 8633275
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagg 105  Q
    |||||||||| ||||||||||||||||||| ||| || | ||| || ||| ||||| || |||||||||    
T  8633343 tctctcttgtgagccgtcacaaaaatcctagtttcttcttctttatccacgaaagaagggtgatttagg 8633275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 22032264 - 22032182
Alignment:
Q  42 cttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaa 124  Q
    ||||| |||||||||||||| | |||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  22032264 cttgtgagccgtcacaaaaaccttaatttttatttcttcatccaccaaagagggatgatttagggtcaatttttgacccaaaa 22032182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 22345091 - 22344990
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || ||||||||| |||| |||| ||| || |||||||| || ||||||||| ||||||||| ||||||||||||||||||| ||| ||||||    
T  22345091 tctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctctaa 22344992  T
Q  137 ct 138  Q
    ||    
T  22344991 ct 22344990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 37685274 - 37685187
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| ||||||||||||||||||| ||| ||| ||||||| ||||||||||| | |||| || ||||||||||||||||||||    
T  37685274 tctctcttgtgagccgtcacaaaaatcctagtttcttt-ccttcatccaccaaagaggaacgattgagagtcaatttttgacccaaaat 37685187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 37700244 - 37700331
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| ||||||||||||||||||| ||| ||| ||||||| ||||||||||| | |||| || ||||||||||||||||||||    
T  37700244 tctctcttgtgagccgtcacaaaaatcctagtttcttt-ccttcatccaccaaagaggaacgattgagagtcaatttttgacccaaaat 37700331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 44514158 - 44514068
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||||| |||| |||||||| ||  ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||| || |||||    
T  44514158 agccgtcaccaaaaccctaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacctctttaact 44514068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 14717421 - 14717340
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgac 118  Q
    |||||||||| ||||||||| ||||  ||| ||| || |||||||| |||||||||||| ||||||||||||||||||||||    
T  14717421 tctctcttgtgagccgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgac 14717340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 12148180 - 12148124
Alignment:
Q  84 caccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||||| | |||||||| |||| |||||||||||||| |||||||||||||||    
T  12148180 caccaaagagcggtgatttagcgtcagtttttgacccaaaaataccactctaactcg 12148124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 30853962 - 30853874
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||| | |||| |||| |||| |||| ||| || |||||||| |||||||||||  ||||| | |||||||||||||||||||||    
T  30853962 tctctcttttgagccatcaccaaaaccctagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaat 30853874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 52839409 - 52839461
Alignment:
Q  88 aaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||||||||||||||||||||||||||||| |||  |||||||||    
T  52839409 aaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaactcg 52839461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 5832220 - 5832271
Alignment:
Q  89 aagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||| |||||||||||||||||||||||| |||| ||| ||||||||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcacccctctaactcg 5832271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 44562868 - 44562825
Alignment:
Q  97 tgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||    
T  44562868 tgatttagggtcaatttttgacccaaaatcacccctctaactcg 44562825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 33703650 - 33703600
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||| ||| |||||||||||||||| ||||||||||| |||||||||    
T  33703650 tccttcatccactaaagagggatgatttatggtcaattttttacccaaaat 33703600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 46589109 - 46589213
Alignment:
Q  38 ctctcttgttagccgtcacaaaaatcctaatttattt-tccttcatgc--accaaagagggatgatttagggtcaatttttgacccaaaattaccactct 134  Q
    ||||||||| ||||||||| |||| ||||||||  || |||||||| |  ||||||||||| ||||||| | |||||||||||| |||||| ||| ||||    
T  46589109 ctctcttgtgagccgtcaccaaaaacctaattttcttctccttcatccccaccaaagaggggtgatttatgatcaatttttgactcaaaatcacc-ctct 46589207  T
Q  135 aactcg 140  Q
    ||||||    
T  46589208 aactcg 46589213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 6213015 - 6212962
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||  ||||||||||    
T  6213015 caaagaggggtgatttatggtcaatttttgacccaaaatcacacctctaactcg 6212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 52839497 - 52839559
Alignment:
Q  78 ttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| || ||||||||| ||||||| | ||||||||||||||||||| |||  |||||||||    
T  52839497 ttcatccatcaaagaggggtgatttatgatcaatttttgacccaaaatcacccttctaactcg 52839559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 17579744 - 17579805
Alignment:
Q  78 ttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||| || ||||||||| ||| ||||||||||||||||| ||||||| | | |||||||||    
T  17579744 ttcattcatcaaagaggggtgacttagggtcaatttttgaaccaaaatcatccctctaactc 17579805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 35077905 - 35077872
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgt 234  Q
    ||||||||||||||||||||| ||||||||||||    
T  35077905 gtgatttcgtcgtcttagtacgacgttgttttgt 35077872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 35078019 - 35077966
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||| ||||||||| | |||| |||||||||||||| ||| ||||||||||    
T  35078019 caaagagagatgatttatgatcaaattttgacccaaaatcacctctctaactcg 35077966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 38646546 - 38646607
Alignment:
Q  64 ctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    ||||||| || ||||||||  | ||||||||  ||||||| |||||||||||||||||||||    
T  38646546 ctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaat 38646607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 48655198 - 48655157
Alignment:
Q  84 caccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    ||||||| |||| |||||||| ||||||||||||||||||||    
T  48655198 caccaaaaaggggtgatttagagtcaatttttgacccaaaat 48655157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 630909 - 630861
Alignment:
Q  92 agggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||| |||||||||||||||||||||||| |||| |||  |||||||||    
T  630909 aggggtgatttagggtcaatttttgaccctaaatcacccatctaactcg 630861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 13691874 - 13691838
Alignment:
Q  100 tttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  13691874 tttagggtcaatttttgacccaaaatcacccctctaa 13691838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 26199532 - 26199607
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaattt 113  Q
    |||||||||| || |||||| |||||| || ||| || |||||||| |||||||||||| |||  ||||||||||||    
T  26199532 tctctcttgtgagtcgtcactaaaatcttagtttcttctccttcatccaccaaagaggggtga-atagggtcaattt 26199607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 47749671 - 47749772
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||| ||| ||||||||| |||| |||||||| || |||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||| ||||| ||    
T  47749671 tctcctgtgagccgtcacgaaaaccctaatttcttctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctatct 47749770  T
Q  139 cg 140  Q
    ||    
T  47749771 cg 47749772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 24470341 - 24470433
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||||| ||| |||| ||| || |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||    
T  24470341 agccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcg 24470433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 24475289 - 24475381
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||||| ||| |||| ||| || |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||    
T  24475289 agccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcg 24475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 35141930 - 35141830
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||||||| ||||||||| |||||| || |||||| |||||||| ||||||||| || ||||||||||||||||||||||| ||||| |||  |||||||    
T  35141930 tctcttgtgagccgtcaccaaaatcatagtttattctccttcattcaccaaagaagggtgatttagggtcaatttttgaccaaaaatcacccttctaact 35141831  T
Q  139 c 139  Q
    |    
T  35141830 c 35141830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 40775202 - 40775305
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| || |||||| |||| |||||||| || |||||||| || ||||||||| ||||||||||||||||||||| ||||||| ||| || |||    
T  40775202 tctctcttgtgagtcgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcacccctataa 40775301  T
Q  137 ctcg 140  Q
    ||||    
T  40775302 ctcg 40775305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 49166862 - 49166963
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| |||||||||| ||| |||| ||| || |||||||| ||||||||| || ||||||||||||||||||||||| ||||| ||| ||||||    
T  49166862 tctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctctaa 49166961  T
Q  137 ct 138  Q
    ||    
T  49166962 ct 49166963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 28015291 - 28015392
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||  ||||| ||| |||| |||||||| ||  ||||||| ||| |||||||| ||||||||||||||||||||| ||||||| ||| ||||||    
T  28015291 tctctcttgggagccgccaccaaaaccctaattttttcaccttcatccactaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaa 28015390  T
Q  137 ct 138  Q
    ||    
T  28015391 ct 28015392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 8611801 - 8611698
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| || ||||||| ||| |||| ||| || |||||||| ||| |||||||| ||||||||||||  |||||||||||| || ||| ||||||    
T  8611801 tctctcctgtgagtcgtcacacaaaccctagtttcttctccttcatccacgaaagaggggtgatttagggtctctttttgacccaatatcacccctctaa 8611702  T
Q  137 ctcg 140  Q
    ||||    
T  8611701 ctcg 8611698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 23732572 - 23732469
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| |||| ||| |||| ||   |||||| || ||||||||| ||||||| |||||||||||||| |||||| ||  ||||||    
T  23732572 tctctcttgtgagccgtcaccaaaaccctcatttcttcaacttcattcatcaaagaggggtgatttaaggtcaatttttgactcaaaatcacttctctaa 23732473  T
Q  137 ctcg 140  Q
    ||||    
T  23732472 ctcg 23732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 38649523 - 38649438
Alignment:
Q  51 cgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||||||||||||| ||  |||||||  || ||| |||| |||||||| |||||||||||||||||||| ||| ||||||    
T  38649523 cgtcaccaaaatcctaatttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcacccctctaa 38649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 21329452 - 21329388
Alignment:
Q  59 aaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaa 123  Q
    |||||||||||| || || || || |||||||||||| || ||||||||||||||||||||||||    
T  21329452 aaatcctaatttcttctcatttatccaccaaagaggggtggtttagggtcaatttttgacccaaa 21329388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 29804820 - 29804756
Alignment:
Q  72 ttttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||| ||||| |||||||||||| || ||||||||||||||||||||| |||| ||| ||||||    
T  29804820 ttttcattcatccaccaaagaggggtggtttagggtcaatttttgaccccaaatcacccctctaa 29804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 10250659 - 10250561
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||||||||||||| |||| | ||||||||| | |||||| ||| ||| |||| ||||  |||||||||||| || ||||||| ||| ||||||    
T  10250659 tctctcttgttagccgtcaccaaaaccttaatttattcttcttcatccactaaaaaggg-tgataaagggtcaattttcgatccaaaatcacccctctaa 10250561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 37399551 - 37399629
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaattttt 115  Q
    |||||||||| |||||||||  ||| |||||||| || | |||||| ||||||||| || ||||||||||| |||||||    
T  37399551 tctctcttgtgagccgtcacgcaaaccctaatttcttcttcttcatccaccaaagacgggtgatttagggttaattttt 37399629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 34595808 - 34595731
Alignment:
Q  58 aaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactcta 135  Q
    |||| |||||||| |||| |||||| |||||||||||  || ||||||||||||||| ||| | |||| |||||||||    
T  34595808 aaaaccctaatttctttttcttcatccaccaaagaggagtggtttagggtcaattttcgactctaaatcaccactcta 34595731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 16263372 - 16263423
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||||    
T  16263372 caaagaggggtgatttaggatcaatttttgatccaaaatcacctctctaact 16263423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 43807269 - 43807226
Alignment:
Q  97 tgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  43807269 tgatttatggtcaatttttgacccaaaatcacctctctaactcg 43807226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 46918339 - 46918421
Alignment:
Q  38 ctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgaccca 121  Q
    |||||||||  |||||||| |||| |||| |||||| |  ||||| || |||||||| ||||||||| ||||||||||||||||    
T  46918339 ctctcttgtgtgccgtcaccaaaa-cctagtttattcttgttcattcatcaaagaggtatgatttagagtcaatttttgaccca 46918421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 29805020 - 29804979
Alignment:
Q  84 caccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||||| || ||||||||||||||||||||| ||||    
T  29805020 caccaaagaggggtggtttagggtcaatttttgaccccaaat 29804979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 32312666 - 32312703
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  32312666 gtgatttcttcgtcttagtgcaacgttgttttgttcgt 32312703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 33530645 - 33530547
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| |||| |||| |||| | || ||| |||| ||||||  | ||||||||| ||||||||||||||  ||||||||||||  ||| ||||||    
T  33530645 tctctcttgtgagccatcaccaaaaccatagtttcttttacttcatctatcaaagaggggtgatttagggtcaa--tttgacccaaaaccacccctctaa 33530548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 14734202 - 14734130
Alignment:
Q  64 ctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || | |||||| || |||||| || || ||||||||||||||||||||| |||| ||| ||||||    
T  14734202 ctaattttttcttcttcatccatcaaagaagggtggtttagggtcaatttttgaccccaaatcacccctctaa 14734130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 25855365 - 25855296
Alignment:
Q  75 tccttcatgcaccaaagagggatg----atttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| |||||||||||| ||    ||||||||||||||||||| ||||||| | | ||||||||||    
T  25855365 tccttcatccaccaaagaggggtgggtgatttagggtcaatttttgatccaaaatcatccctctaactcg 25855296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 35135362 - 35135274
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| ||  ||||| |||| ||||  ||||| |||||||| || | ||||||  |||||||| |||||||||||||| |||||    
T  35135362 tctctcttgtaagttgtcaccaaaaccctagattattctccttcatccatctaagaggagtgatttagagtcaatttttgacctaaaat 35135274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 9661788 - 9661889
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || ||||||||| |||| |||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  9661788 tctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaa 9661887  T
Q  137 ct 138  Q
    ||    
T  9661888 ct 9661889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 29577264 - 29577176
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||| ||  ||| |||| ||||||||||||| |||||||| ||||||    
T  29577264 tctctcttgtgagccgtcaccaaaatcctaatttattttccttcatccataaaaaaggggtgatttagggtcactttttgactcaaaat 29577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 28588496 - 28588599
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||| |||| ||||||||| ||||||||| ||| || |||||||| || || ||| || ||||||||||||||||||||||||||||| ||| ||||||    
T  28588496 tctcttttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcacccctctaa 28588595  T
Q  137 ctcg 140  Q
    ||||    
T  28588596 ctcg 28588599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 1646120 - 1646017
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||| | ||||||||| |||| |||| ||| || | |||||| |||||||||| ||||||||||||| |||| |||||||||||| ||| ||||||    
T  1646120 tctctcttttgagccgtcactaaaaccctagtttcttcttcttcattcaccaaagagagatgatttagggttaattgttgacccaaaatcacccctctaa 1646021  T
Q  137 ctcg 140  Q
    ||||    
T  1646020 ctcg 1646017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 1657749 - 1657650
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| || |||||| |||| |||| ||| || |||||||| || ||||||| | ||||||||||||||||||||||||||||| ||| ||||||    
T  1657749 tctctcttgtgagacgtcactaaaaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaa 1657650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 54420891 - 54420788
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| ||||||||||  || |||| ||| || |||||||| ||||||||| || ||||||||||||||||||||||||||||| ||  ||||||    
T  54420891 tctctcctgtgagccgtcacacgaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcactcctctaa 54420792  T
Q  137 ctcg 140  Q
    ||||    
T  54420791 ctcg 54420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 4634229 - 4634319
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||||| |||| |||| ||| || |||||||| || ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||    
T  4634229 agccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaact 4634319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 16991818 - 16991910
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| || |||| |||| ||| || |||||||| || ||||||| | ||||||||||||||||||||||||||||| |||  |||||||||    
T  16991818 agccgttaccaaaaccctagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatctaactcg 16991910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 14542653 - 14542590
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| | | ||||||||    
T  14542653 tccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaact 14542590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 43156749 - 43156812
Alignment:
Q  75 tccttcatgcaccaaagagggatgattta-gggtcaatttttgacccaaaattaccactctaac 137  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||    
T  43156749 tccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcacccctctaac 43156812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 46729057 - 46729010
Alignment:
Q  78 ttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  46729057 ttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaat 46729010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 3673605 - 3673657
Alignment:
Q  84 caccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||| ||||||    
T  3673605 caccaaagaggggtgatttagggtcaatttttgaccccaaatcacccctctaa 3673657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 3169015 - 3169078
Alignment:
Q  77 cttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| |||||||||| | |||||||| ||||||| |||||||||||| ||| ||||||||||    
T  3169015 cttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcacccctctaactcg 3169078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 34115783 - 34115733
Alignment:
Q  85 accaaagagggatgatttagggtcaatttttgacccaaaattaccactcta 135  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||| |||||    
T  34115783 accaaagagagataatttagggtcaatttttgacccaaaatcacccctcta 34115733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 38434558 - 38434612
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagag 93  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| ||||||||||    
T  38434558 tctcttgtgagccgtcaccaaaatcctaattttttatccttcatccaccaaagag 38434612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 9474688 - 9474623
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgattt 102  Q
    |||||||||| ||||||||| |||| |||| ||| || ||||||||  ||||||||||||||||||    
T  9474688 tctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatcaaccaaagagggatgattt 9474623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 23067973 - 23067924
Alignment:
Q  91 gagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||||||||||    
T  23067973 gaggggtgatttagggtcaatttttgaccctaaatcacccctctaactcg 23067924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 35338351 - 35338431
Alignment:
Q  58 aaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||||||||||| || ||||||||  |||||||| | ||||||||||||||| ||||||||| |||| ||| || ||||||    
T  35338351 aaaatcctaattttttctccttcatctaccaaagatg-atgatttagggtcaaattttgaccctaaatcacctctgtaactc 35338431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 41486560 - 41486613
Alignment:
Q  87 caaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||| | ||||||||||||||||||| ||||||| ||| ||||||||||    
T  41486560 caaagaggggttatttagggtcaatttttgatccaaaatcacccctctaactcg 41486613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 43156875 - 43156912
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  43156875 gtgatttcgtcgtcttagtgcaacgttgttttgttcgt 43156912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 52555846 - 52555797
Alignment:
Q  91 gagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| |||||||||| |||||||||||||||||| ||| ||||||||||    
T  52555846 gaggggtgatttagggacaatttttgacccaaaatcacctctctaactcg 52555797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 38546289 - 38546188
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| || | |||| ||||||||| ||| |||||| ||||  | |||||||||  |||||| |||||||||  |||||||||| ||| ||||||    
T  38546289 tctctcttgtgagtcatcaccaaaatcctagtttcttttccgtcatctatcaaagaggggagatttaaggtcaattt--gacccaaaatcacccctctaa 38546192  T
Q  137 ctcg 140  Q
    ||||    
T  38546191 ctcg 38546188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 51646043 - 51646127
Alignment:
Q  52 gtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| |||| ||| ||  ||||||| || ||||||| ||||||||| ||||||||||| ||| ||||| ||| ||||||    
T  51646043 gtcacaaaaaccctactttcttcaccttcatccatcaaagagagatgatttatggtcaatttttaacctaaaatcacccctctaa 51646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 7242945 - 7242847
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| |||| |||| |||| |||| ||| ||   ||| || ||||||| ||||  |||||||||||||||||||||||||||| |||  |||||    
T  7242945 tctctcttgtgagccatcaccaaaaccctagtttctt---ctttatccaccaaaaaggggcgatttagggtcaatttttgacccaaaatcacctttctaa 7242849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 4959694 - 4959652
Alignment:
Q  97 tgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||||||||||||||||||| ||||||| | |||||||||||    
T  4959694 tgatttagggtcaatttttgatccaaaatcatcactctaactc 4959652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 6408412 - 6408478
Alignment:
Q  75 tccttcatgcaccaaagagg-gatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||||||||||| | ||||| ||||||||||||| ||||||||| ||| || |||||||    
T  6408412 tccttcatccaccaaagaggaggtgattaagggtcaattttttacccaaaatcacctctttaactcg 6408478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 4959588 - 4959551
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||||| || |||||||||||||    
T  4959588 gtgatttcgtcgtcttagtacgacattgttttgttcgt 4959551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 27651918 - 27651955
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  27651918 gtgatttcgtcgtcttagtgcaacgttgtgttgttcgt 27651955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 38434698 - 38434735
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  38434698 gtgatttcgtcgtcttagtgcgacgttgttttgttcgt 38434735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 42972033 - 42972061
Alignment:
Q  97 tgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||||||||||||||||||||||    
T  42972033 tgatttagggtcaatttttgacccaaaat 42972061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 9269958 - 9270059
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||||||| ||||||||| ||||  ||| ||| || |||||||| |||||||||||| ||||||| | ||||||||||||||||||| ||| ||||||||    
T  9269958 tctcttgtgagccgtcacgaaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccctctaact 9270057  T
Q  139 cg 140  Q
    ||    
T  9270058 cg 9270059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 36545959 - 36545857
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| | |||||||  |||||||| ||| || |||||||| |||||||||||||||||||| ||||||||| |||||||| || ||| ||||||    
T  36545959 tctctcttgtga-ccgtcactgaaatcctagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcacccctctaa 36545861  T
Q  137 ctcg 140  Q
    ||||    
T  36545860 ctcg 36545857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 10042717 - 10042799
Alignment:
Q  58 aaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||| |||| || ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  10042717 aaaaccctagttcattctccttcatccaccaaagaggggtgatttatggtcaatttttgacccaaaatcacccctctaactcg 10042799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 9992600 - 9992703
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||| || | | |||||| || |||||||| ||  | || ||| ||||||||||||||||||||||||||||| ||| ||||||    
T  9992600 tctctcttgtgagccgtcaccaagaccataatttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcacccctctaa 9992699  T
Q  137 ctcg 140  Q
    ||||    
T  9992700 ctcg 9992703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 31874057 - 31874122
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| || ||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||    
T  31874057 tccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaactcg 31874122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 37658912 - 37659000
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||| |||| |||| |||||||| ||  | ||||| |||||||||||| |||||||||||||||||||||| |||||| ||| ||||||    
T  37658912 agccatcaccaaaaccctaattttttcactttcatccaccaaagaggggtgatttagggtcaatttttgacacaaaatcacccctctaa 37659000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 31147941 - 31147890
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaatt 126  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  31147941 tccttcattcatcaaagaaggatgatttagggtcaatttttgacccaaaatt 31147890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 44295289 - 44295352
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| | | ||||||||    
T  44295289 tccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaact 44295352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 15665485 - 15665575
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||||| ||||  ||| ||| ||| ||||||| || ||||||||| |||||||||||||| ||||||| |||||| ||| ||||||||    
T  15665485 agccgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcacccctctaact 15665575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 16937479 - 16937417
Alignment:
Q  76 ccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||| | | ||||||||    
T  16937479 ccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcatccctctaact 16937417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 8054933 - 8054884
Alignment:
Q  91 gagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  8054933 gaggggtgatttagggtcaatttttgacccaaaattatccctctaactcg 8054884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 14327441 - 14327497
Alignment:
Q  64 ctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgaccc 120  Q
    ||||||| || |||||||| |||||||||||| || |||||||||||||||||||||    
T  14327441 ctaatttcttctccttcatccaccaaagaggggtggtttagggtcaatttttgaccc 14327497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 23766677 - 23766765
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| || |||||||||||  ||| ||| || | |||||| ||||||||||   ||||||| |||||||||||||||||||||    
T  23766677 tctctcttgtgagtcgtcacaaaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaat 23766765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 32256890 - 32256799
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaat-ttttgacccaaaattaccactctaact 138  Q
    ||||||||  ||||||||| ||| ||   |||||| |||||||||||| ||||||||||||||| |||| ||||||||| ||| ||||||||    
T  32256890 agccgtcatcaaaatcctagttttttcatcttcatccaccaaagaggggtgatttagggtcaatttttttacccaaaatcacccctctaact 32256799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 32061755 - 32061817
Alignment:
Q  63 cctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||| || |||||||| |||||||||||| |  ||||||||||||||||||||| ||||    
T  32061755 cctaatttcttctccttcatccaccaaagaggggtagtttagggtcaatttttgaccccaaat 32061817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 37719788 - 37719866
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttga 117  Q
    |||||||| ||||||| | |||| |||| ||| || |||||||| |||||| || || |||||||||||||||||||||    
T  37719788 tctcttgtgagccgtctctaaaaccctagtttcttctccttcatccaccaaggacgggtgatttagggtcaatttttga 37719866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 18190996 - 18190924
Alignment:
Q  63 cctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||| ||||||||||| ||| |||||||| || ||||||||||||||||||| | |||| |||| |||||    
T  18190996 cctaatttcttttccttcatccactaaagaggg-tggtttagggtcaatttttgactccaaatcaccaatctaa 18190924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 10042872 - 10042908
Alignment:
Q  202 tgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10042872 tgatttcgtcgtcttagtgcaacgttgttttgttcgt 10042908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 284613 - 284551
Alignment:
Q  78 ttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| ||| |||||| | ||||||| | ||||||||||||||||||||||| || |||||||    
T  284613 ttcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcg 284551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 631264 - 631326
Alignment:
Q  78 ttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| ||| |||||| | ||||||| | ||||||||||||||||||||||| || |||||||    
T  631264 ttcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcg 631326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 817076 - 817138
Alignment:
Q  78 ttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||| ||| |||||| | ||||||| | ||||||||||||||||||||||| || |||||||    
T  817076 ttcatccactaaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcg 817138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 15827109 - 15827146
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  15827109 gtgatttcgtcgtcttagtgcgacgttgttttgttcgt 15827146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 26937498 - 26937563
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||| ||| |||||||||||| | ||||||||| || ||||||| |||||| ||| ||||||||||    
T  26937498 tcctgcatccaccaaagaggggttatttagggttaagttttgactcaaaatcacccctctaactcg 26937563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 14115971 - 14115884
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| |||||||||  |||  ||| ||  || || ||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  14115971 tctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaaagatgggtgatttagg-tcaatttttgacccaaaat 14115884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 2415335 - 2415436
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||||||  |||| |||| |||| |||||||||| || ||||||  | ||||||||||||||||||||||||||||| |||  |||||    
T  2415335 tctctcttgtgagccgtcatcaaaaccctagtttaatttccttcatccatcaaagataggtgatttagggtcaatttttgacccaaaatcacccttctaa 2415434  T
Q  137 ct 138  Q
    ||    
T  2415435 ct 2415436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 31645764 - 31645865
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    ||||||| || ||||||||| |||| |||| ||| || |||||||| ||  |||||||| ||||||||||||||||||||| ||||||| ||| ||||||    
T  31645764 tctctctagtgagccgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaa 31645863  T
Q  137 ct 138  Q
    ||    
T  31645864 ct 31645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 33486749 - 33486648
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||  ||||||||| |||| | |||||| ||  ||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||  |||||    
T  33486749 tctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcacccatctaa 33486650  T
Q  137 ct 138  Q
    ||    
T  33486649 ct 33486648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 6887355 - 6887256
Alignment:
Q  39 tctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||| || ||||||||| ||||  ||| ||| || |||||||| || ||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||    
T  6887355 tctctagtgagccgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctctaact 6887256  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 34894095 - 34893992
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||| ||||  ||  |||| |||| ||| || |||||||| || ||||||||| ||||||| ||||||||||||||||||||| ||| ||||||    
T  34894095 tctctcttgtgagccaacatcaaaaccctagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctctaa 34893996  T
Q  137 ctcg 140  Q
    ||||    
T  34893995 ctcg 34893992  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 41554436 - 41554522
Alignment:
Q  52 gtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||| ||||||||||||| ||  ||||||| || ||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||||    
T  41554436 gtcaccaaaatcctaatttcttcaccttcattcatcaaagaggggtgatttaggatcaatttttgatccaaaatcacccctctaact 41554522  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 37424938 - 37425031
Alignment:
Q  48 agccgtcacaaaaatcctaattta-ttttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    ||||||||| |||| |||| |||  ||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||| ||  ||||||||||    
T  37424938 agccgtcaccaaaaccctagttttcttttccttcatccaccaaagaggggtgatttatggtcaatttctgacccaaaatcacgcctctaactcg 37425031  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 6648073 - 6647989
Alignment:
Q  56 caaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||| |||| ||||||||||||||| || |||||||||  |||||| |||||| |||||||||||||| ||  ||||||||||    
T  6648073 caaaaaccctagtttattttccttcatccatcaaagaggggcgatttatggtcaaattttgacccaaaatcactcctctaactcg 6647989  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 18472901 - 18472803
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||||||  ||||||||| ||||  ||| ||| ||  ||||||| ||||||||||||||   ||||||||||||||||||||||||| ||| ||||||    
T  18472901 tctctcttgggagccgtcaccaaaactctagtttcttcaccttcatccaccaaagagggat---ttagggtcaatttttgacccaaaatcacccctctaa 18472805  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 28618539 - 28618642
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaa 136  Q
    |||||| ||| |||||||||| ||  |||| ||| || ||||||||   |||||||||| ||||||| ||||||||||| ||||||||| ||| ||||||    
T  28618539 tctctcctgtgagccgtcacacaagccctagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcacccctctaa 28618638  T
Q  137 ctcg 140  Q
    ||||    
T  28618639 ctcg 28618642  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 41063569 - 41063487
Alignment:
Q  41 tcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||| ||||||||| ||||||||||||| || |||||||| || ||||||||| ||| | |||||||||||||||| ||||||    
T  41063569 tcttgtcagccgtcaccaaaatcctaatttcttctccttcatccatcaaagaggg-tga-tcagggtcaatttttgactcaaaat 41063487  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 29310476 - 29310427
Alignment:
Q  89 aagagggatgatttagggtcaatttttgacccaaaattaccactctaact 138  Q
    ||||||| ||||||||||||||||||||| ||||||| ||| ||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcacccctctaact 29310427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 4070490 - 4070592
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatc-ctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactcta 135  Q
    |||||| ||| |||||||||||||| | ||| ||| || | |||||| ||||||| |||| |||||||||||| |||||||||||||||| ||| ||||     
T  4070490 tctctcgtgtaagccgtcacaaaaaactctagtttcttct-cttcatccaccaaaaaggggtgatttagggtc-atttttgacccaaaatcacccctctg 4070587  T
Q  136 actcg 140  Q
    |||||    
T  4070588 actcg 4070592  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 8812291 - 8812231
Alignment:
Q  77 cttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaac 137  Q
    |||||| ||||||| |||| |||| |||||||||||||| ||||||||| ||| |||||||    
T  8812291 cttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcacccctctaac 8812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 19646182 - 19646118
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||||||  ||||||||||| || |||| ||||||| ||||||||||||| ||| |||||||||    
T  19646182 tccttcatcgaccaaagaggggtggtttaaggtcaatgtttgacccaaaatcacccctctaactc 19646118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 41357973 - 41358061
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| ||||  ||| ||||  ||| ||| |||||||||||  | ||||||  | |||||||||||||||||||||||||||||    
T  41357973 tctctcttgtgagccaccaccaaaactctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaat 41358061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 13007791 - 13007828
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  13007791 gtgatttcgtcgtcttagtgcaacgttgttttattcgt 13007828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 13079244 - 13079281
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  13079244 gtgatttcgtcgtcttagtgcaacgttgttttattcgt 13079281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 13080252 - 13080289
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  13080252 gtgatttcgtcgtcttagtgcaacgttgttttattcgt 13080289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 20270813 - 20270850
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  20270813 gtgatttcgtcgtcttagtgcgacgttgttttgttcgt 20270850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 22397563 - 22397526
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttcgt 238  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  22397563 gtgatttcgtcgtcttagtgcgacgttgttttgttcgt 22397526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 137073 - 137038
Alignment:
Q  201 gtgatttcgtcgtcttagtacaacgttgttttgttc 236  Q
    ||||||||||||||||||||| ||||||||||||||    
T  137073 gtgatttcgtcgtcttagtacgacgttgttttgttc 137038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 244569 - 244647
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaa-tttattttccttcatgcaccaaagagggatgatttagggtcaattttt 115  Q
    |||||||||| ||||||||| |||| ||||| ||| || | |||||| ||| |||||||| |||||||||||||||||||    
T  244569 tctctcttgtgagccgtcaccaaaa-cctaagtttcttcttcttcatccacaaaagagggttgatttagggtcaattttt 244647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 10965 - 11056
Alignment:
Q  48 agccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactc 139  Q
    ||||||||| |||| |||| ||| || ||  |||| ||||||||| || |||||| |||||||||||||||  ||||| ||| |||||||||    
T  10965 agccgtcaccaaaaccctagtttcttctctatcatacaccaaagatgggtgattttgggtcaatttttgacttaaaatcacccctctaactc 11056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 753 - 818
Alignment:
Q  75 tccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaattaccactctaactcg 140  Q
    |||||||| ||||||| ||   ||||||| ||||||||||||||| ||||| | ||||||||||||    
T  753 tccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatcatcactctaactcg 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 11909 - 11868
Alignment:
Q  84 caccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  11909 caccaaagatagatgatttagtgtcaatttttgacccaaaat 11868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 1270 - 1183
Alignment:
Q  37 tctctcttgttagccgtcacaaaaatcctaatttattttccttcatgcaccaaagagggatgatttagggtcaatttttgacccaaaat 125  Q
    |||||||||| |||||||||  |||  ||| ||  || || ||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  1270 tctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaaagatgggtgatttagg-tcaatttttgacccaaaat 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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