View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16818_high_28 (Length: 216)
Name: NF16818_high_28
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 25591677 - 25591577
Alignment:
| Q |
106 |
gttgcctttttaatatcctttaatatcctttttattattggaagaagaaagtacatggtggtattattcatttcacgatttttgttggtacaaattgatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25591677 |
gttgcctttttaatatcctttaatatcctttttattattggaagaagaaagtacatggtggtattattcatttcacgatttttgttggtacaaattgatg |
25591578 |
T |
|
| Q |
206 |
a |
206 |
Q |
| |
|
| |
|
|
| T |
25591577 |
a |
25591577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University