View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16818_high_4 (Length: 585)

Name: NF16818_high_4
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16818_high_4
NF16818_high_4
[»] chr1 (8 HSPs)
chr1 (20-574)||(51455288-51455841)
chr1 (456-570)||(30206808-30206922)
chr1 (456-567)||(51480424-51480535)
chr1 (486-570)||(51497310-51497394)
chr1 (184-273)||(51479949-51480038)
chr1 (168-275)||(30207301-30207408)
chr1 (190-274)||(51496994-51497078)
chr1 (299-417)||(51480269-51480387)
[»] chr5 (4 HSPs)
chr5 (68-574)||(43160261-43160774)
chr5 (491-574)||(27396465-27396548)
chr5 (488-567)||(20868672-20868751)
chr5 (174-263)||(27395958-27396047)
[»] scaffold0020 (1 HSPs)
scaffold0020 (489-567)||(137353-137431)
[»] chr6 (2 HSPs)
chr6 (486-567)||(18085553-18085634)
chr6 (184-267)||(18079591-18079673)


Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 20 - 574
Target Start/End: Original strand, 51455288 - 51455841
Alignment:
Q  20 gcttgcggtcttttaaactcatcgatgttagtgatccacccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccattt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455288 gcttgcggtcttttaaactcatcgatgttagtgatccacccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccattt 51455387  T
Q  120 ggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51455388 ggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagttctctaagtatctgctgaaaggacttcttccacatttaagac 51455487  T
Q  220 ggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcatt 319  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51455488 ggttggatgcagaacaaatgattgagaaggaaagagaagccaagagacgaggtattcctgtatagtcggagaaaatttgtagttttatatatttttcatt 51455587  T
Q  320 ttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaag 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51455588 ttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaa 51455687  T
Q  420 gactgatttggtatattaatcaatgcnnnnnnnnacttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaat 519  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  51455688 gactgatttggtatattaatcaatgc-tttttttacttattctaatgctatatagttgttgacttcacactttttgtagtgacaactgcaaaacatcaat 51455786  T
Q  520 atttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455787 atttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 51455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 456 - 570
Target Start/End: Complemental strand, 30206922 - 30206808
Alignment:
Q  456 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 555  Q
    |||| ||||| |||||||| |  |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30206922 ttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttt 30206823  T
Q  556 tgacctttgtctcct 570  Q
    |||| ||||||||||    
T  30206822 tgacatttgtctcct 30206808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 456 - 567
Target Start/End: Original strand, 51480424 - 51480535
Alignment:
Q  456 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 555  Q
    ||||||| || |||||| |||  ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51480424 ttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttt 51480523  T
Q  556 tgacctttgtct 567  Q
    | || |||||||    
T  51480524 taacatttgtct 51480535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 570
Target Start/End: Original strand, 51497310 - 51497394
Alignment:
Q  486 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcct 570  Q
    ||||||| |||||||| | ||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  51497310 acactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcct 51497394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 51479949 - 51480038
Alignment:
Q  184 agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggta 273  Q
    ||||| || |||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | |||||| ||||||| |||||    
T  51479949 agtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggta 51480038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 30207408 - 30207301
Alignment:
Q  168 gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 267  Q
    ||||||||| ||||  ||||| || |||||  |||||||||  |||||||||  ||||||||||||||||||   |||||||| | |||||| |||||||    
T  30207408 gaggttgagctctccaagtatatgttgaaaatacttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagac 30207309  T
Q  268 gaggtatt 275  Q
     |||||||    
T  30207308 aaggtatt 30207301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 51496994 - 51497078
Alignment:
Q  190 tgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtat 274  Q
    ||||||||| |||| ||||| ||||||| || ||||||||||| ||||||  ||||||||| | |||||| |||| || ||||||    
T  51496994 tgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtat 51497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 417
Target Start/End: Original strand, 51480269 - 51480387
Alignment:
Q  299 tagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaag 398  Q
    |||||||||||||||| || ||||||||||| |||||||| |   ||| ||||||||||||  || ||||||||  |||||   || |||||  |||||     
T  51480269 tagtttcatatattttccaatttataatttgcttttgggacgaacattgcagggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaa 51480368  T
Q  399 atgagcgtgtgttctggta 417  Q
    || ||||||||| ||||||    
T  51480369 ataagcgtgtgtactggta 51480387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 68 - 574
Target Start/End: Original strand, 43160261 - 43160774
Alignment:
Q  68 attaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggag 167  Q
    ||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||  ||||||| || | | |||    
T  43160261 attaactattcttatgatttttctgtattgtatatttgaaatgtatccatctggtttactataggaaatgaagcataaggtcgaaaccaacagcaatgag 43160360  T
Q  168 gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 267  Q
    || |||||||||||  || || | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  43160361 gaagttgagttctcgaagaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatgatttagaaggaaagagaagccaagatac 43160460  T
Q  268 gaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagg----gctctcactctc 363  Q
     |||||||||| ||||||| ||||  |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  43160461 aaggtattcctttatagtcagagatcatttttagttttatatatttttcattttataatttgattttgggatgtgaattacaggcctctctctcactctc 43160560  T
Q  364 aaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattcta 463  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||| ||||    
T  43160561 aatgctaaatataaaaccggcggattattctaaagatgcgcgtgtgttctggtaaggactgatttggtatattaatcaatg-ttttctttactta-tcta 43160658  T
Q  464 atgctatatag-----ctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga 558  Q
    ||||| |||||      ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||  |||||||| ||||| |    
T  43160659 atgctttatagtgacaatgttggcttcacactttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaa 43160758  T
Q  559 cctttgtctcctctgt 574  Q
    ||||||||||||||||    
T  43160759 cctttgtctcctctgt 43160774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 574
Target Start/End: Original strand, 27396465 - 27396548
Alignment:
Q  491 ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 574  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||  || |||| || |||||||||||||||||||||    
T  27396465 ttttgtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgt 27396548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 567
Target Start/End: Complemental strand, 20868751 - 20868672
Alignment:
Q  488 actttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 567  Q
    |||||||||||||| |||||| | |  || ||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  20868751 actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtct 20868672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 27395958 - 27396047
Alignment:
Q  174 gagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaag 263  Q
    ||||||||  ||||| |||| ||||  |||||||||||||||| ||| |||||| |||||||||||   |||||||| | ||||||||||    
T  27395958 gagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaag 27396047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 567
Target Start/End: Complemental strand, 137431 - 137353
Alignment:
Q  489 ctttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 567  Q
    ||||||||||||| |||||| |||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  137431 ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtct 137353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 486 - 567
Target Start/End: Original strand, 18085553 - 18085634
Alignment:
Q  486 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 567  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  | ||||||||||| || |||||||    
T  18085553 acactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtct 18085634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 18079591 - 18079673
Alignment:
Q  184 agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 267  Q
    ||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | || ||| |||||||    
T  18079591 agtatatgctgaaag-acttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagac 18079673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University