View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16818_high_9 (Length: 458)
Name: NF16818_high_9
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Original strand, 43603519 - 43603951
Alignment:
| Q |
10 |
agatgaagcataagagactaataacatcaatggcaattaacacagcagaggatattatatacactgcatctcttgacaaaacagtaaaagtatggagaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603519 |
agatgaagcataagagactaataacatcaatggcaattaacacagcagaggatattatatacactgcatctcttgacaaaacagtaaaagtatggagaat |
43603618 |
T |
|
| Q |
110 |
ctcagacctcaaatgcatagagacaatcaaagcacaccctgatccaataaatgacatgattgtatccgacgacggcgttctctacacggcctccgacgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603619 |
ctcagacctcaaatgcatagagacaatcaaagcacaccctgatccaataaatgacatgattgtatccgacgacggcgttctctacacggcctccgacgat |
43603718 |
T |
|
| Q |
210 |
gccacaatcaaagtttggcgtcggaatttttgtagccatgatcaacctcattctctcacagtaacacttcatgcgaaatattcacctgtgaaagccttaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43603719 |
gccacaatcaaagtttggcgtcggaatttttgtagccatgatcaacctcattctctcacagtaacacttcatgccaaatattcacctgtgaaagccttaa |
43603818 |
T |
|
| Q |
310 |
cactaaccaataatgatggaggaattttatatggtggatgcactgatggttacatacactattggttaaagggttggtttgcaggacaactgcaatatgg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43603819 |
cactaaccaataatgatggaggaattttatatggtggatgcactgatggttacatacactattggttaaagggttggtttgcaggacaactgcaatatgg |
43603918 |
T |
|
| Q |
410 |
tggatcaattcaaggacacacacatgcagtatt |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43603919 |
tggatcaattcaaggacacacacatgcagtatt |
43603951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University