View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_1 (Length: 727)
Name: NF16818_low_1
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 15 - 711
Target Start/End: Complemental strand, 48085571 - 48084894
Alignment:
| Q |
15 |
cacagaaagaaatgtttgcactaggattgaatcaaaggaagacattttattactgacaatttgagtgggaaaaccagtactcaagaacttggcatgacaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085571 |
cacagaaagaaatgtttgcactaggattgaaacaaaggaagacattttattactgacaatttgagtgggaaaaccagtactcaagaacttggcatgacaa |
48085472 |
T |
|
| Q |
115 |
accactagctatggaatacaaaacaaaagattaatggataaattaaagggacacagataaagaaaatacacacataaactaacnnnnnnncattaaccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48085471 |
accactagctatggaatacaaaacaaaag--------------------gacacagataaagaaaatacacacataaactaacaaaaaaacattaaccaa |
48085392 |
T |
|
| Q |
215 |
atgtcttggatggattgatcaagtcctggaatctaaggccatgatagtgctgagattcatgggatacatgtactgagcactgcccctaaggatttggttg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48085391 |
atgtcttggatggattgatcaagtcctggaatctaaggccatgatagtgctgagattcatgggatacatgtactgagcactgcccctaaggattcggttg |
48085292 |
T |
|
| Q |
315 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085291 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaaagcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaa |
48085192 |
T |
|
| Q |
415 |
gtccattgtatggcccttgtccacagcatgctacctttgatgttgcaaatcctgtc-aagcccaattcaatacataacatatatagatagagttggtcaa |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48085191 |
gtccattgtatggcccttgtccacagcatgctacctttgatgttgcaaatcctgtcaaagcccaattcaatacataacatatatagatagagttggtcaa |
48085092 |
T |
|
| Q |
514 |
agtcaaacaatttaaaggaatatgaatattgcattacactactacataccataagcttgagggttggtaatgtaatccatgtgcattctataagcatcag |
613 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48085091 |
agtcaaacaatttaaaggaatatgaatatggcattacactactacataccataagcttgagggttggtaatgtaatccatgtgcattctatatgcatcag |
48084992 |
T |
|
| Q |
614 |
cagcaacgaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaagatgcagctctctcaagttccaca |
711 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48084991 |
cagcaacaaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaggatgcagctctctcaagttccaca |
48084894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 48102536 - 48102491
Alignment:
| Q |
321 |
attttgtttgccttttcagatggatggaatgcatcccaaaatgcat |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48102536 |
attttgtttgccttttcagatggatggaatgcatcccaaaatgcat |
48102491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 1809590 - 1809526
Alignment:
| Q |
327 |
tttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt |
391 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| | |||||||| ||||||||||| |
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| T |
1809590 |
tttgccttttcagatggatggaatggatcccaaaatacatacaagtctctgttagggcacaagtt |
1809526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 467
Target Start/End: Complemental strand, 48078106 - 48078011
Alignment:
| Q |
372 |
tctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgctacctttgatgttgcaaatcct |
467 |
Q |
| |
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|||||||||||||| | ||| || ||||| ||||| || |||| |||||||| || ||||| ||||| ||||| || |||||||| ||||||||| |
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|
| T |
48078106 |
tctctgtttgggcatatgttggatgctggagtacatagtccaatcccattgtagggtccttgaccacaacatgcaacttttgatgtggcaaatcct |
48078011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 468
Target Start/End: Complemental strand, 48093283 - 48093140
Alignment:
| Q |
325 |
tgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgta |
424 |
Q |
| |
|
|||| |||||||| || ||||| ||||||||||||||||||| || | ||| ||||| || || || |||||| || ||||||||||||||||| |
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| T |
48093283 |
tgttagccttttctgaaggatgaaatgcatcccaaaatgcatattcgtcacggttagggcataaattagatagtggtgtgcatagcccaagtccattgta |
48093184 |
T |
|
| Q |
425 |
tggcccttgtccacagcatgctacctttgatgttgcaaatcctg |
468 |
Q |
| |
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|| ||||| ||||| ||||||| || |||||| ||||||||| |
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| T |
48093183 |
gggtccttgaccacaacatgctatctgtgatgtaacaaatcctg |
48093140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 315 - 469
Target Start/End: Original strand, 35376267 - 35376421
Alignment:
| Q |
315 |
actatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaa |
414 |
Q |
| |
|
||||||||| || | || ||||||||||||||||||| |||||||||||||| ||| |||| ||| ||||||||||||| ||||| || || |||| |
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| T |
35376267 |
actatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcacaagtttgaaaggggtgtgcatagtccaa |
35376366 |
T |
|
| Q |
415 |
gtccattgtatggcccttgtccacagcatgctacctttgatgttgcaaatcctgt |
469 |
Q |
| |
|
|||||||| || ||||||||||| || |||| ||||||||| |||||||||| |
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|
| T |
35376367 |
tcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgt |
35376421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 557 - 712
Target Start/End: Original strand, 35376524 - 35376679
Alignment:
| Q |
557 |
acataccataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatct |
656 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| | |||| |||||||| ||||| ||||| ||||||||| ||| ||| | | |
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|
| T |
35376524 |
acataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttcttt |
35376623 |
T |
|
| Q |
657 |
gatcatgtcaacaagttgaggattgtataaagatgcagctctctcaagttccacat |
712 |
Q |
| |
|
|||||| || |||||||| ||||| ||||| || ||||||||| | |||||||||| |
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|
| T |
35376624 |
gatcatttcgacaagttgtggattatataaggaggcagctctcacgagttccacat |
35376679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 35357711 - 35357791
Alignment:
| Q |
314 |
gactatgattttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtttga |
394 |
Q |
| |
|
|||||||||| || | || |||||||||||||| ||||||||||||||||||| ||| | || ||||||||||| ||||| |
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|
| T |
35357711 |
gactatgattctgctagctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttga |
35357791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 699
Target Start/End: Original strand, 35357946 - 35358088
Alignment:
| Q |
557 |
acataccataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatct |
656 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||| ||| |||| | |||||| ||||| ||| ||||||||| ||| ||| | | |
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|
| T |
35357946 |
acataccaaaagctttagggttggtaataaaatccatgtgcattttatgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgt |
35358045 |
T |
|
| Q |
657 |
gatcatgtcaacaagttgaggattgtataaagatgcagctctc |
699 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||| || ||||||||| |
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|
| T |
35358046 |
gatcatttgaacaagttgtggattatataaggacgcagctctc |
35358088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 7385568 - 7385635
Alignment:
| Q |
324 |
ttgtttgccttttcagatggatggaatgcatcccaaaatgcattaagttctctgtttgggcacaagtt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||| |
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|
| T |
7385568 |
ttgtttgccttttcagatggatggaatgcatcccaaaatgcatttaagtctctatttgagcacaagtt |
7385635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 468
Target Start/End: Original strand, 6339168 - 6339282
Alignment:
| Q |
354 |
tcccaaaatgcattaagttctctgtttgggcacaagtttgaggctggtgtacaaagcccaagtccattgtatggcccttgtccacagcatgctacctttg |
453 |
Q |
| |
|
||||||||||||| ||| || || || ||||||||||| || ||||| ||||| || |||| ||||||| |||| ||||| ||||| |||||| |||| |
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|
| T |
6339168 |
tcccaaaatgcataaagatccctattagggcacaagttagaagctggagtacatagtccaactccattgaatggtccttgaccacaacatgcttgttttg |
6339267 |
T |
|
| Q |
454 |
atgttgcaaatcctg |
468 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
6339268 |
atgtttcaaatcctg |
6339282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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