View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_12 (Length: 430)
Name: NF16818_low_12
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 44 - 412
Target Start/End: Original strand, 11078956 - 11079324
Alignment:
| Q |
44 |
ttaacgtttccatatctcaatatatatcatctatctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttactcttcc |
143 |
Q |
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| T |
11078956 |
ttaacgtttccacgtctcaatatatatcatctgtctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttactcttcc |
11079055 |
T |
|
| Q |
144 |
acctcatttacaaaccctagaactctctcctcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11079056 |
acctcatttacaaaccctagaactctctcctcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatg |
11079155 |
T |
|
| Q |
244 |
ttggatttccttaactatagtgcttcacaagttaccaacaatcttgaaattccaacttacttttactacacctcaggagcttctcttctatgcctttttc |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11079156 |
ttggatttccttaactatagtgcttcacaagttaccaacaatcttgaaattccaacttacttttactacacctcaggagcttctcttctatgcctttttc |
11079255 |
T |
|
| Q |
344 |
ttaactttccaacttttcacaaaaacgctacaatacctattaaggactataacatgcatacacctattg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11079256 |
ttaactttccaacttttcacaaaaacgctacaatacctattaaggactataacatgcatacacctattg |
11079324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 11018323 - 11018412
Alignment:
| Q |
174 |
tcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatag |
263 |
Q |
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| T |
11018323 |
tcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
11018412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 389
Target Start/End: Original strand, 11001952 - 11002163
Alignment:
| Q |
178 |
agcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatagtgcttcacaagtta |
277 |
Q |
| |
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|||||||| |||||||| | ||||| | |||||| | |||||| ||||| | |||| |||| || |||||||| | ||||||||| |||||||| | |
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| T |
11001952 |
agcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggtattatcttagatttcctcacctatagtgcctcacaagtca |
11002051 |
T |
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| Q |
278 |
ccaacaatcttgaaattccaacttacttttactacacctcaggagcttctcttctatgcctttttcttaactttccaacttttcacaaaaacgctacaat |
377 |
Q |
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||| ||| ||||||||||| |||||||||||||| || ||||| ||| | |||| | | ||| ||| |||||||||| ||||| |||| ||||||| |
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| T |
11002052 |
ccaccaaccttgaaattcctacttacttttactatacttcaggtgctaccattctttccactttcctttactttccaaccattcaccaaaaagctacaaa |
11002151 |
T |
|
| Q |
378 |
acctattaagga |
389 |
Q |
| |
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||| || ||||| |
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| T |
11002152 |
acccatcaagga |
11002163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 389
Target Start/End: Original strand, 10967806 - 10968007
Alignment:
| Q |
188 |
atgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatagtgcttcacaagttaccaacaatct |
287 |
Q |
| |
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||||||| ||||||| ||||||||| | |||||| ||||||| |||| |||||| || ||||| || | |||| ||| || |||| || | || || |
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| T |
10967806 |
atgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagttatcttagattttctcacatataatgcctcgaaagtcactacaaagct |
10967905 |
T |
|
| Q |
288 |
tgaaattccaacttacttttactacacctcaggagcttctcttctatgcctttttcttaactttccaacttttcacaaaaacgctacaatacctattaag |
387 |
Q |
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||||||||| ||||||||||||| ||| ||||| ||| | || || |||||| ||| ||| ||||||| ||||| |||| ||||||| ||| |||||| |
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| T |
10967906 |
tgaaattcccacttacttttacttcacttcaggtgctattgttttagcccttttccttcactatccaactattcaccaaaatgctacaaaacccattaag |
10968005 |
T |
|
| Q |
388 |
ga |
389 |
Q |
| |
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|| |
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|
| T |
10968006 |
ga |
10968007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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