View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_19 (Length: 316)
Name: NF16818_low_19
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 40114302 - 40114017
Alignment:
| Q |
20 |
gacattaggttccaaggagaaagtacaatggtgtattaggcagaaaattgcattaggaacagcaaagggtatattatatcttcatgagggttgtcaaaaa |
119 |
Q |
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| T |
40114302 |
gacattaggttccaaggagaaagtacaatggtgtattaggcagaaaattgcattaggaacagcaaaaggtatattatatcttcatgagggttgtcaaaaa |
40114203 |
T |
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| Q |
120 |
agatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggtatatatgctttggattcttttatagtatttttgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114202 |
agatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggtatatatgctttggattcttttatagtatttttgtg |
40114103 |
T |
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| Q |
220 |
tttaccttatagacaaaatacaattttttggaagattctgcattatatgtgatggaccaaatctttctttcaacatcacctttctt |
305 |
Q |
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| T |
40114102 |
tttaccttatagacaaaatacaattttttggaagattctgcattatatgtgatggaccaaatctctctttcaacatcacctttctt |
40114017 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 6987932 - 6987844
Alignment:
| Q |
96 |
tatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggt |
184 |
Q |
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||||| |||||||| ||||||| ||| |||| |||| |||||| |||||| | ||||| | ||| |||||||||||||||||||||| |
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| T |
6987932 |
tatctgcatgagggatgtcaaagaaggattattcacaaagatatcaaagcttctaatatacttctctcagaggactttgagcctcaggt |
6987844 |
T |
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