View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_21 (Length: 288)
Name: NF16818_low_21
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 1616910 - 1616634
Alignment:
| Q |
1 |
ttttgcttgggcttctttcttcatccttcaggtatgtatctgtttataaaattaagaaaatggagaataaaattgaaattatacattatttgaatattga |
100 |
Q |
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| T |
1616910 |
ttttgcttgggcttctt-cttcatccttcaggtatgtaactgtttataaaattaagaaagtgaagaataaaattgaaattatacattatttgaatattga |
1616812 |
T |
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| Q |
101 |
aattcttttttgtgattaatgcaggctgtgacattaaggaaatattcagctcaactctcactcacagccatagtgtgttccttgggcacacttcaatcaa |
200 |
Q |
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| T |
1616811 |
tttttgtgtgtgtgattaatgaaggttgtgacattgaggaaatactcagctcaactctcactcacagccataatattttccttgggcacacttcaatcaa |
1616712 |
T |
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| Q |
201 |
ttgctgtgacttttgttatggagcataacccaaatgcttggagcattggttgggacatgaacctattagctgcagcct |
278 |
Q |
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| T |
1616711 |
ttgatgtgacttttgttatggagcataacccaaatgcttggtgcattggttgggacatgaacttattagctgcagcct |
1616634 |
T |
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Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 32571458 - 32571186
Alignment:
| Q |
1 |
ttttgcttgggcttctttcttcatccttcaggtatgtatctgtttataaaattaagaaaatggagaataaaattgaaattatacattatttgaatattga |
100 |
Q |
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||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32571458 |
ttttgctcgggcttctt-cttcatccttcaggtatgtaactgtttataaaattaagaaagtggagaataaaattgaaattatacattatttgaatattga |
32571360 |
T |
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| Q |
101 |
aattcttttttgtgattaatgcaggctgtgacattaaggaaatattcagctcaactctcactcacagccatagtgtgttccttgggcacacttcaatcaa |
200 |
Q |
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| T |
32571359 |
--tttttgtgtgtgattaatgaaggttc--acattgaggaaatactcagctcaactctcactcacagccatagtgtgttccttgggcacacttcaatcaa |
32571264 |
T |
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| Q |
201 |
ttgctgtgacttttgttatggagcataacccaaatgcttggagcattggttgggacatgaacctattagctgcagcct |
278 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
32571263 |
ttgatgtgacttttgttatggagcataacccaaatgcttggtgcattggttgggacatgaacttattagctgcagcct |
32571186 |
T |
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