View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_25 (Length: 267)
Name: NF16818_low_25
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_25 |
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| [»] scaffold0685 (1 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 24892235 - 24892396
Alignment:
| Q |
85 |
atgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaagttgttaggaactcagggaagagataaatgggaaattgatagaaacaatcaaag |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24892235 |
atgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaagttgttaggaactcagggaagagagaaatgggaaattgatagaaacaatcaaag |
24892334 |
T |
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| Q |
185 |
gaaatgaacagtttgattgaaaatactctgaaagggagagagaactctccaccaagggtttc |
246 |
Q |
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| T |
24892335 |
gaaatgaacagtttaattgaaaatactctgaatgcgagagagaactctccaccaagggtttc |
24892396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 24919242 - 24919456
Alignment:
| Q |
32 |
tttaacctcaaattagtctgatatcaatgagaaaaggacatctcnnnnnnnnnatgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaag |
131 |
Q |
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| T |
24919242 |
tttaacctcaaattagtctgatatcaatgagaa--ggacatctcttttttg---tgaaaattcacatccaacaaggtatcgaacaccacaaaaacacaag |
24919336 |
T |
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| Q |
132 |
ttgttaggaactcagggaagagataaatgggaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactctgaaagggagagagaactc |
231 |
Q |
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|||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||| |
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| T |
24919337 |
ttgttaggaactcaaggaagaaagaaatgtgaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatgctcagaatgggagaaagaactc |
24919436 |
T |
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| Q |
232 |
tccaccaagggtttccccct |
251 |
Q |
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| T |
24919437 |
tccaccaaggattcccccct |
24919456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 24995110 - 24995323
Alignment:
| Q |
32 |
tttaacctcaaattagtctgatatcaatgagaaaaggacatctcnnnnnnnnnatgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaag |
131 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| |||||||| |||| |||||||| | |
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| T |
24995110 |
tttaacctcaaattagtctgatatcaatgagaa--ggacatctcttttttg---tgaaaattcacatccaacaaggtatcaaatgccgcaaaaacacagg |
24995204 |
T |
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| Q |
132 |
ttgtt-aggaactcagggaagagataaatgggaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactctgaaagggagagagaact |
230 |
Q |
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||||| |||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
24995205 |
ttgtttaggaacccagggaggaga--aatgtgaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactcagaatgggagaaagaact |
24995302 |
T |
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| Q |
231 |
ctccaccaagggtttccccct |
251 |
Q |
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||||||||||| || |||||| |
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| T |
24995303 |
ctccaccaaggattcccccct |
24995323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24892172 - 24892207
Alignment:
| Q |
1 |
tgtatccattagaatttctgacatcaagacctttaa |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24892172 |
tgtatccattagaatttctgacatcaagacctttaa |
24892207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 3849 - 4062
Alignment:
| Q |
32 |
tttaacctcaaattagtctgatatcaatgagaaaaggacatctcnnnnnnnnnatgaaaattcacatcgatcaaagtatcaaacgccgtgaaaacacaag |
131 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| ||||| ||| || |||||||||| |
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| T |
3849 |
tttaacctcaaattagtctgatatcaatgagaa--ggacatctcttttttg---tgaaaattcacatccaacaaggtatcgaacaccacaaaaacacaag |
3943 |
T |
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| Q |
132 |
ttgttaggaactcagggaagagataaatgggaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatactctgaaagggagagagaactc |
231 |
Q |
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|||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||| |
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| T |
3944 |
ttgttaggaactcaaggaagaaagaaatgtgaaattgatagaaacaatcaaaggaaatgaacagtttgattgaaaatgctcagaatgggagaaagaactc |
4043 |
T |
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| Q |
232 |
tccaccaagggtttccccc |
250 |
Q |
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|||||||||| || ||||| |
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| T |
4044 |
tccaccaaggattcccccc |
4062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 31934 - 32033
Alignment:
| Q |
156 |
aaatgggaaattgata-gaaacaatcaaa-ggaaatgaacag-tttgattg-aaaatactctgaaagggagagagaactctcc-accaagggtttccccc |
250 |
Q |
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||||| |||||||||| |||||||||||| |||||||||||| |||||||| ||||||||| ||| |||||| |||||||||| ||||||| || ||||| |
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| T |
31934 |
aaatgtgaaattgataagaaacaatcaaaaggaaatgaacagttttgattgaaaaatactcagaatgggagaaagaactctcctaccaaggattcccccc |
32033 |
T |
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