View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16818_low_32 (Length: 226)

Name: NF16818_low_32
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16818_low_32
NF16818_low_32
[»] chr5 (22 HSPs)
chr5 (17-124)||(31643389-31643499)
chr5 (123-226)||(31643884-31643987)
chr5 (123-226)||(31279489-31279592)
chr5 (123-226)||(31281417-31281520)
chr5 (132-226)||(31284701-31284795)
chr5 (132-226)||(40843336-40843430)
chr5 (123-226)||(31288470-31288573)
chr5 (123-226)||(31407417-31407520)
chr5 (132-226)||(31475954-31476048)
chr5 (43-93)||(31643460-31643510)
chr5 (132-204)||(31329930-31330002)
chr5 (150-226)||(31368556-31368632)
chr5 (132-204)||(31378712-31378784)
chr5 (135-226)||(31317342-31317433)
chr5 (135-226)||(31332183-31332274)
chr5 (151-200)||(31313256-31313305)
chr5 (135-226)||(31380968-31381059)
chr5 (151-200)||(31363009-31363058)
chr5 (134-187)||(31416561-31416614)
chr5 (134-187)||(31494138-31494191)
chr5 (153-217)||(31387834-31387898)
chr5 (131-187)||(31463031-31463087)
[»] chr3 (1 HSPs)
chr3 (153-226)||(25708421-25708494)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 31643389 - 31643499
Alignment:
Q  17 gatgaaggtgaatggaagtcaata---gttacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatcttcatccgagagactattag 113  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31643389 gatgaaggtgaatggaagtcaataatagttacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatcttcatccgagagactagtag 31643488  T
Q  114 tatgttcgtta 124  Q
    |||||||||||    
T  31643489 tatgttcgtta 31643499  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 31643884 - 31643987
Alignment:
Q  123 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 222  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||    
T  31643884 taaaggaaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagccca 31643983  T
Q  223 caaa 226  Q
    ||||    
T  31643984 caaa 31643987  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 31279489 - 31279592
Alignment:
Q  123 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 222  Q
    ||||||||||||||||| | || ||| |||||||| |||||||||||||||||||| |||||||| || |  |||||||||| |  ||||||||| || |    
T  31279489 taaaggaaaatcttcaagaaattccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagccta 31279588  T
Q  223 caaa 226  Q
    ||||    
T  31279589 caaa 31279592  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 31281520 - 31281417
Alignment:
Q  123 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 222  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||||||||||| | |||||| || || ||||||| || |  ||||||||| || |    
T  31281520 taaaggaaaatcttcaacaaattccaatctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaagcaaagccta 31281421  T
Q  223 caaa 226  Q
    ||||    
T  31281420 caaa 31281417  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 31284795 - 31284701
Alignment:
Q  132 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    ||||||| ||||| ||| |||||||| |||||||||||||||||||| |||||||| || || ||||||| |  | |||||||||| ||||||||    
T  31284795 atcttcagcagattccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaa 31284701  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 40843336 - 40843430
Alignment:
Q  132 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||| |||||||| || |  |||||||||  |  ||||||||| ||||||||    
T  40843336 atcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagcagctgaagcaaatcccacaaa 40843430  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 31288573 - 31288470
Alignment:
Q  123 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 222  Q
    |||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||  ||| ||||  |||| |||||||||| |  ||||||||| || |    
T  31288573 taaaggaaaatcttcaacagattccagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagccta 31288474  T
Q  223 caaa 226  Q
    ||||    
T  31288473 caaa 31288470  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 31407417 - 31407520
Alignment:
Q  123 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 222  Q
    ||||| || |||||||||| || ||||| ||||||||||| ||||||||||| ||| |||||||| ||||| | |||||||  |  ||||||||| ||||    
T  31407417 taaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagcagctgaagcaaagccca 31407516  T
Q  223 caaa 226  Q
    ||||    
T  31407517 caaa 31407520  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 31475954 - 31476048
Alignment:
Q  132 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    |||||||||| || ||| | ||||||||||||||| ||||||||||| |||||||| || || |||||||||  |  ||||||||| ||||||||    
T  31475954 atcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagcagctgaagcaaagcccacaaa 31476048  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 31643460 - 31643510
Alignment:
Q  43 tacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatc 93  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||    
T  31643460 tacgaaatcttcatccgagagactagtagtatgttcgttatgtacgaaatc 31643510  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 31330002 - 31329930
Alignment:
Q  132 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaa 204  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || ||||||||||    
T  31330002 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaa 31329930  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 31368632 - 31368556
Alignment:
Q  150 tctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    |||||||| |||||||| ||||||||||| | ||||||||| |  |||||||||| | |||||||||| ||||||||    
T  31368632 tctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaacaagagatgaagcaaagcccacaaa 31368556  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 31378784 - 31378712
Alignment:
Q  132 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaa 204  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || ||||||||||    
T  31378784 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaa 31378712  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 31317433 - 31317342
Alignment:
Q  135 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    ||||||| || ||| |||||||| |||||||| ||||||||||| |  |||||||| |  |||||||||| | |||||||||| ||||||||    
T  31317433 ttcaacaaattccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaa 31317342  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 31332274 - 31332183
Alignment:
Q  135 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    ||||||| || ||| |||||||| || ||||||||||||||||| | |||||| || || |||||||||| | |||||||||| || |||||    
T  31332274 ttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaa 31332183  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 31313305 - 31313256
Alignment:
Q  151 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtcca 200  Q
    ||||||||||||||||||||||||| || ||||||| |||||| ||||||    
T  31313305 ctccaaatagatagttgaaggaagaacttagagcattgcagagcagtcca 31313256  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 31381059 - 31380968
Alignment:
Q  135 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    ||||||| || ||| |||||||| || || |||||||||||||| | |||||| || || |||||||||| | |||||||||| || |||||    
T  31381059 ttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaa 31380968  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 31363058 - 31363009
Alignment:
Q  151 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtcca 200  Q
    ||||||| ||||||||||||||||| || ||||||| |||||| ||||||    
T  31363058 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtcca 31363009  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 31416561 - 31416614
Alignment:
Q  134 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 187  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31416561 cttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcata 31416614  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 31494138 - 31494191
Alignment:
Q  134 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 187  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31494138 cttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcata 31494191  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 31387834 - 31387898
Alignment:
Q  153 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 217  Q
    ||||||||||   |||||||||||||||||||||| || || |||||||||| | ||||| ||||    
T  31387834 ccaaatagatgagtgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaa 31387898  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 31463031 - 31463087
Alignment:
Q  131 aatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 187  Q
    |||||||||||  | ||||| ||||||||||| ||||||||||||||| | ||||||    
T  31463031 aatcttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcata 31463087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 25708494 - 25708421
Alignment:
Q  153 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaa 226  Q
    ||||| ||||| || || |||||||| |||||||| |||| |||||||||||||  ||||||||| || |||||    
T  25708494 ccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaa 25708421  T

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