View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_6 (Length: 521)
Name: NF16818_low_6
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 66 - 503
Target Start/End: Complemental strand, 7804579 - 7804165
Alignment:
| Q |
66 |
tctatgggatcacacatagaggaaattatgtagagaatacgagtaaatgggtgtagaagatctaaacacatgaatttttaatgtagaagctcaacattac |
165 |
Q |
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| T |
7804579 |
tctatgagatcaaacattgaggaaattacgtagagaatacgagtaaatgggtgttgaagatctaaacacgtgaatttcttatgtagaagttcaacattat |
7804480 |
T |
|
| Q |
166 |
tttccatcgtagagaaactaaaaataattacatgtcactgtatactttgttatacaa-gtttgaattacattttcattggcaagcattttgatgtaattg |
264 |
Q |
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| T |
7804479 |
tttccatcgtagagaaactaaaaataattacatgtcactatatactttgttatacaatgtttgaattacattctcattggcaagcattttgatgtaattg |
7804380 |
T |
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| Q |
265 |
catatcaattgatatttctaatcatgttttacttttaaggaatttactcttnnnnnnnctttaaaggaatttaatacaccacttatagtgattaattatg |
364 |
Q |
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| T |
7804379 |
catatcaattgatatttctaatcatgttttacttttaaggaatttactcttaaaaaaacttaaaaggaatttaatgcaccacttatagtg----attatg |
7804284 |
T |
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| Q |
365 |
taagtttatgagatatatgaaagaacattataactatgacgtaatttgattgaagtaaccaatcttatttaacaaaataaagtttggttgttgctgtatt |
464 |
Q |
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| T |
7804283 |
taagtttctgagatatatgaaagaacatta--------------------tgaagtaaccgatcttatttaacaaaataaagtttggttgttgttgtatt |
7804204 |
T |
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| Q |
465 |
catcgtggatctattttggagtgaataaattatggttga |
503 |
Q |
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| T |
7804203 |
catcgtggatctattttggagtgaataaattatggttga |
7804165 |
T |
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