View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16818_low_7 (Length: 512)
Name: NF16818_low_7
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16818_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 37746895 - 37746391
Alignment:
| Q |
1 |
gaacaagttgctgaattgataagagtttgtgttgatccggattcggacaagagaccaacgatgaaggaagtcagtgaaaaattgagagagataacaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37746895 |
gaacaagttgctgaattgataagagtttgtgttgatccggattcggacaagagaccgacgatgaaggaagtcagtgaaaaattgagagagataacaaaaa |
37746796 |
T |
|
| Q |
101 |
tgtcacctgaaattgtagttccaaaactttctccgctctggtgggctgagattgagatttcttctgcataagcatgttgaaaacaatcaatgaatcagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37746795 |
tgtcacctgaaattgtagttccaaaactttctccgctctggtgggctgagattgagatttcttctgcataagcatgttgaaaacaatcaatgaatcagat |
37746696 |
T |
|
| Q |
201 |
tttagttagttaccagtatgagaagttttagctttgttatcatttttacttagcttaaggtacacaaaagttgtcacttctagtatctattgtagaatgc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37746695 |
tttagttagttaccagaatgagaagttttagctttgttatcatttttacttagcttaaggtacacaaaagttgtcacttctagtatctattgtagaatgc |
37746596 |
T |
|
| Q |
301 |
ttggtctcaaaaaacattgtatatgagtgagatcgaaaaatgtaaagtgaagttcttttagggtgctttctttttaccgggagcatcccagtcatgagtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37746595 |
ttggtctcaaaaaacattgtatatgagtgagatcgaaaaatgtaaagtgaagttcttttagggtgctttctttttaccgggagcatcccagtcatgagtc |
37746496 |
T |
|
| Q |
401 |
ccgagagtacttttttgtctccaaagtgtttgattagggtacgtatta------------ttttagatgcatataagttttattatttaaatttggttaa |
488 |
Q |
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| T |
37746495 |
ccgagagtacttttttgtctccaaagtgtttgattagggtacgtattattttttcaagtattttagatggatataagttttattatttaaatttggttaa |
37746396 |
T |
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| Q |
489 |
aatat |
493 |
Q |
| |
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||||| |
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| T |
37746395 |
aatat |
37746391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 35849832 - 35849659
Alignment:
| Q |
1 |
gaacaagttgctgaattgataagagtttgtgttgatccggattcggacaagagaccaacgatgaaggaagtcagtgaaaaattgagagagataacaaaaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||| | |||||||||||||||||||| |
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| T |
35849832 |
gaacaagttgctgaattaataagagtttgtgttgatccggattcggagaagaggccgacgatgaaggaagtttgtg--agattgagagagataacaaaaa |
35849735 |
T |
|
| Q |
101 |
tgtcacctgaaattgtagttccaaaactttctccgctctggtgggctgagattgagatttcttctgcataagcatgttgaaa |
182 |
Q |
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|| |||||||| ||| |||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||| |
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| T |
35849734 |
tgccacctgaatttgcagttccaatacttttcccac------aggctgagattgagatttcttctgcataagcatgttgaaa |
35849659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 35849594 - 35849541
Alignment:
| Q |
239 |
atcatttttacttagcttaaggtacacaaaagttgtcacttctagtatctattgt |
293 |
Q |
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||||||||||| |||||||||||||| |||||||| | ||||| ||||||||||| |
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| T |
35849594 |
atcatttttacctagcttaaggtacaaaaaagttgac-cttcttgtatctattgt |
35849541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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