View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16818_low_9 (Length: 476)

Name: NF16818_low_9
Description: NF16818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16818_low_9
NF16818_low_9
[»] chr1 (4 HSPs)
chr1 (17-456)||(19886937-19887380)
chr1 (327-369)||(19595974-19596016)
chr1 (327-369)||(32495730-32495772)
chr1 (327-369)||(46336464-46336506)
[»] chr2 (2 HSPs)
chr2 (321-369)||(26692013-26692061)
chr2 (327-369)||(38992861-38992903)
[»] chr7 (2 HSPs)
chr7 (319-369)||(1261984-1262034)
chr7 (321-369)||(41985398-41985446)
[»] chr6 (3 HSPs)
chr6 (327-369)||(14277217-14277259)
chr6 (327-369)||(23594525-23594567)
chr6 (327-369)||(26377962-26378004)
[»] chr5 (1 HSPs)
chr5 (327-369)||(39305464-39305506)
[»] chr4 (1 HSPs)
chr4 (327-369)||(12240719-12240761)
[»] chr3 (1 HSPs)
chr3 (327-369)||(45903469-45903511)
[»] chr8 (2 HSPs)
chr8 (321-369)||(13083590-13083638)
chr8 (329-369)||(41388878-41388918)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 19887380 - 19886937
Alignment:
Q  17 agaaaacaatgctagtaacaataataacaacaacaacaatgcttcttcatcagcagcaacaatttaccctccaatgagtgaagatcatagcagcagtagc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||||||    
T  19887380 agaaaacaatgctagtaacaataataacaacaacaacaatgcttcttcatcagcagcaccggtttaccctccaatgagcgaagatcatagcagcagtagc 19887281  T
Q  117 agtggcaacaacaacaataataacaacagcattggtaacctgaatttggattcaagattggtgtacctcaaccttggtgctactcaaatgggtggtgatg 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19887280 agtggcaacaacaataataataacaacagcattggtaacctgaatttggattcaagattggtgtacctcaaccttggtgctactcaaatgggtggtgatg 19887181  T
Q  217 atgataatcgacacaacaatagtcatagagaagccatgaatcgtcaaggtggtcatggatgtgacccatcaatgtatcatcactctcatgacttctaagc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19887180 atgataatcgacacaacaatagtcatagagaagccatgaatcgtcaaggtggtcatggatgtgacccatcaatgtatcatcactctcatgacttctaagc 19887081  T
Q  317 ctagggatttggatttgctgttgtagcaaattcacacgatttgccgcagtagctagctacctaccta----cctagcaaagagtggcacaaaattttcta 412  Q
    |||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||    |||||||||||||||||||||||||||||    
T  19887080 ctagggatctggatttactgttgtagcaaattcacacagtttgccgcagtagctagctagctacctacctacctagcaaagagtggcacaaaattttcta 19886981  T
Q  413 tatgaattgaattaatataattgaagttattttgaattactact 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19886980 tatgaattgaattaatataattgaagttattttgaattactact 19886937  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 19595974 - 19596016
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  19595974 ggatttgctgttgtagcaaattcacacagtttgccgcagtagc 19596016  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 32495730 - 32495772
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  32495730 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 32495772  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 46336506 - 46336464
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  46336506 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 46336464  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 26692061 - 26692013
Alignment:
Q  321 ggatttggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  26692061 ggatttggatttgctgctgtagcaaattcacacagtttgccgcagtagc 26692013  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 38992903 - 38992861
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  38992903 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 38992861  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 1261984 - 1262034
Alignment:
Q  319 agggatttggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    ||||||||||||||| ||||||| |||||||||||  ||||||||||||||    
T  1261984 agggatttggatttgttgttgtaccaaattcacacagtttgccgcagtagc 1262034  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 41985446 - 41985398
Alignment:
Q  321 ggatttggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||| |||||||||||  ||||||||||||||| ||||| |||||||||    
T  41985446 ggatctggatttgctgccgtagcaaattcacacaatttgtcgcagtagc 41985398  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 14277217 - 14277259
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  14277217 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 14277259  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 23594525 - 23594567
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  23594525 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 23594567  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 26378004 - 26377962
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    ||||||| |||||||||||||||||||  ||||||||||||||    
T  26378004 ggatttgttgttgtagcaaattcacacagtttgccgcagtagc 26377962  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 39305464 - 39305506
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  39305464 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 39305506  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 12240761 - 12240719
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  12240761 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 12240719  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 45903511 - 45903469
Alignment:
Q  327 ggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  45903511 ggatttgctgctgtagcaaattcacacagtttgccgcagtagc 45903469  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 13083590 - 13083638
Alignment:
Q  321 ggatttggatttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    |||| ||||||| ||||||||||||||| ||||  ||||||||||||||    
T  13083590 ggatctggatttactgttgtagcaaatttacacagtttgccgcagtagc 13083638  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 41388878 - 41388918
Alignment:
Q  329 atttgctgttgtagcaaattcacacgatttgccgcagtagc 369  Q
    ||||| |||||||||||||||||||| |||| |||||||||    
T  41388878 atttgatgttgtagcaaattcacacggtttgtcgcagtagc 41388918  T

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