View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16819_low_1 (Length: 333)
Name: NF16819_low_1
Description: NF16819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16819_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 45231295 - 45230996
Alignment:
| Q |
18 |
caccttgcacatgccaagggccaggtctggtggttgagatggagaagagtctcatgtgtcttatataataagaaagtattgcttaaattgaacgaaaaat |
117 |
Q |
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| T |
45231295 |
caccttgcacatgtcaagggccaggtctggtggttgagatggagaagagtctcatgtattttatgtgataaaaaagtattgcttaagttgaacgaaaaat |
45231196 |
T |
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| Q |
118 |
tatgttgaagaaaattcaatgtttgtatgatgcaaagaagttgttgttgcgttggatgaattacagacaacattcgagagcatttttaagaattttgagg |
217 |
Q |
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| T |
45231195 |
tatgtcgaagaaaagtcaatgtttgtatgacgcaaagaagttgttgttgggttggatgaat----gacagcattgaagagcatttttaagaattttgagg |
45231100 |
T |
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| Q |
218 |
gacgtataaggaattgaa--ggggtctatctatagatcgaatttggt-----gagaacagaacacccagcaaagcaaacctaatccaaagacccgttaat |
310 |
Q |
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| T |
45231099 |
gacgtataaacaattgaaggggggtctatctatagatcgaatttggtcagaacagaacagaacacccagcaaagcaaacctaatccaaagacccgttaat |
45231000 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 34827621 - 34827549
Alignment:
| Q |
48 |
tggttgagatggagaagagtctcatgtgtcttatataataagaaagtattgcttaaattgaacgaaaaattat |
120 |
Q |
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| T |
34827621 |
tggttgaaatggagaagagcctcatgtgttttatgtgataagaaagtactgcttaaattgaaaggaaaattat |
34827549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 7189752 - 7189681
Alignment:
| Q |
47 |
gtggttgagatggagaagagtctcatgtgtcttatataataagaaagtattgcttaaattgaacgaaaaatt |
118 |
Q |
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| T |
7189752 |
gtggttgaaatggagaaaagtctcaggtgttttatttgataagaaagtattacttaaattgaaagagaaatt |
7189681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 30345288 - 30345360
Alignment:
| Q |
46 |
ggtggttgagatggagaagagtctcatgtgtcttatataataagaaagtattgcttaaattgaacgaaaaatt |
118 |
Q |
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| T |
30345288 |
ggtggttgaaatggagaagagtctcaggtgttttatgcgataagaaagtaccgcttaaattgaaaggaaaatt |
30345360 |
T |
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