View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16819_low_3 (Length: 297)

Name: NF16819_low_3
Description: NF16819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16819_low_3
NF16819_low_3
[»] chr1 (4 HSPs)
chr1 (163-286)||(25131362-25131485)
chr1 (90-160)||(16851700-16851771)
chr1 (90-160)||(52986620-52986691)
chr1 (99-160)||(21198742-21198804)
[»] chr5 (2 HSPs)
chr5 (90-160)||(14404358-14404429)
chr5 (91-155)||(40665776-40665839)
[»] chr3 (4 HSPs)
chr3 (90-160)||(3274539-3274610)
chr3 (90-160)||(3277949-3278020)
chr3 (90-160)||(39925906-39925977)
chr3 (90-160)||(5026732-5026804)
[»] scaffold0097 (1 HSPs)
scaffold0097 (90-160)||(30565-30636)
[»] chr2 (3 HSPs)
chr2 (90-160)||(20726736-20726807)
chr2 (99-155)||(11023796-11023852)
chr2 (90-132)||(24780446-24780488)
[»] scaffold0766 (1 HSPs)
scaffold0766 (90-160)||(3378-3449)
[»] scaffold0047 (1 HSPs)
scaffold0047 (93-160)||(9494-9562)
[»] chr6 (3 HSPs)
chr6 (90-160)||(12352819-12352890)
chr6 (93-160)||(18677864-18677933)
chr6 (106-160)||(24170734-24170790)
[»] scaffold0004 (1 HSPs)
scaffold0004 (90-160)||(112777-112847)
[»] chr8 (2 HSPs)
chr8 (90-157)||(39038835-39038904)
chr8 (126-160)||(185846-185880)
[»] chr4 (1 HSPs)
chr4 (90-155)||(37440099-37440164)
[»] chr7 (1 HSPs)
chr7 (90-160)||(15890790-15890861)
[»] scaffold1744 (1 HSPs)
scaffold1744 (115-155)||(71-112)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 25131362 - 25131485
Alignment:
Q  163 tcttcatcctatctagtttcaactaccattttaagactcttgcattctcccagatcattttacaccacttttgcaactatgacttcttgcgtttcaacat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131362 tcttcatcctatctagtttcaactaccattttaagactcttgcattctcccagatcattttacaccacttttgcaactatgacttcttgcgtttcaacat 25131461  T
Q  263 tcttctttcctgtttgtcgtctgt 286  Q
    ||||||||||||||||||||||||    
T  25131462 tcttctttcctgtttgtcgtctgt 25131485  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 16851700 - 16851771
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16851700 gtgcttatcttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 16851771  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 52986691 - 52986620
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcac-cccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  52986691 gtgcttatcttaaatcgttttttaaagaacacaattcacccccctcttatgtgtttgaagtcacttggtcaa 52986620  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 21198742 - 21198804
Alignment:
Q  99 ttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  21198742 ttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttgttcaa 21198804  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 14404429 - 14404358
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcac-cccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14404429 gtgcttatcttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 14404358  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 40665839 - 40665776
Alignment:
Q  91 tgcttatcttaaatcgttttctaaagaacacaattcaccccctcttgtgtgtttgaagtcacttg 155  Q
    ||||||| ||||||| |||  |||||||||||| ||||||| |||||||||||||||||||||||    
T  40665839 tgcttattttaaatcatttcttaaagaacacaactcacccc-tcttgtgtgtttgaagtcacttg 40665776  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 3274539 - 3274610
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3274539 gtgcttatcttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 3274610  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 3277949 - 3278020
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3277949 gtgcttatcttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 3278020  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 39925906 - 39925977
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39925906 gtgcttatcttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 39925977  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 5026804 - 5026732
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcac--cccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  5026804 gtgcttatcttaaatcgttttctaaagaacacaattcaccccccctcttgtgtgtttgaagtcatttggtcaa 5026732  T

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Target: scaffold0097 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 30636 - 30565
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcac-cccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30636 gtgcttattttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 30565  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 20726807 - 20726736
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcac-cccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20726807 gtgcttattttaaatcgttttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttggtcaa 20726736  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 11023796 - 11023852
Alignment:
Q  99 ttaaatcgttttctaaagaacacaattcaccccctcttgtgtgtttgaagtcacttg 155  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  11023796 ttaaatcgttttttaaagatcacaattcaccccctcttgtgtgtttgaagtcacttg 11023852  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 24780446 - 24780488
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcaccccc 132  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  24780446 gtgcttattttaaatcgttttctaaagaacacaattcaccccc 24780488  T

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Target: scaffold0766 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 3378 - 3449
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  3378 gtgcttattttaaatcgttttctaaagaacacaattcacccccctcttatgtgtttgaagtcacttgttcaa 3449  T

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Target: scaffold0047 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 9494 - 9562
Alignment:
Q  93 cttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  9494 cttatcttaaataattttctaaagaacacaattcacccccctcttgtgtgtttgaagtcacttgttcaa 9562  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 12352819 - 12352890
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  12352819 gtgcttcttttaaatcgttttctaaagaacacaattcacccccctcttatgtgtttgaagtcacttgttcaa 12352890  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 18677864 - 18677933
Alignment:
Q  93 cttatcttaaatcgttttctaaagaacacaattcacc--ccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    ||||| ||||||| ||||| |||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  18677864 cttattttaaatcattttcgaaagaacacaattcacctcccctcttgtgtgtttgaagtcacttgttcaa 18677933  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 24170734 - 24170790
Alignment:
Q  106 gttttctaaagaacacaattcaccc--cctcttgtgtgtttgaagtcacttggtcaa 160  Q
    ||||| |||||||||||||||||||  | |||||||||||||||||| |||| ||||    
T  24170734 gttttttaaagaacacaattcacccctcatcttgtgtgtttgaagtcgcttgttcaa 24170790  T

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Target: scaffold0004 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 112847 - 112777
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcaccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  112847 gtgcttattttaaatcatttcttaaagaacacaattcaccccctcttgtgtgtttgcagtcacttgttcaa 112777  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 39038835 - 39038904
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca--ccccctcttgtgtgtttgaagtcacttggt 157  Q
    |||||||| |||| | ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39038835 gtgcttattttaatttgttttctaaagaacacaattcaccccccctcttgtgtgtttgaagtcacttggt 39038904  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 185880 - 185846
Alignment:
Q  126 caccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||||||||||||||||||||||||||| ||||    
T  185880 caccccctcttgtgtgtttgaagtcacttgttcaa 185846  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 37440099 - 37440164
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattcaccccctcttgtgtgtttgaagtcacttg 155  Q
    |||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||    
T  37440099 gtgcttattttaaatcgttttttaaaaaacacaattcatcccctcttatgtgtttgaagtcacttg 37440164  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 15890790 - 15890861
Alignment:
Q  90 gtgcttatcttaaatcgttttctaaagaacacaattca-ccccctcttgtgtgtttgaagtcacttggtcaa 160  Q
    |||||| | |||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||| ||||    
T  15890790 gtgcttgttttaaatcgttttttaaagaacacatttcaccccccccttgtgtgtttgaagtcacttgttcaa 15890861  T

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Target: scaffold1744 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 112 - 71
Alignment:
Q  115 agaacacaattcaccccc-tcttgtgtgtttgaagtcacttg 155  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  112 agaacacaattcacccccctcttgtgtgtttgaagtcacttg 71  T

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