View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16819_low_4 (Length: 290)
Name: NF16819_low_4
Description: NF16819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16819_low_4 |
 | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold1744 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0303 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 21410 - 21142
Alignment:
| Q |
3 |
aaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21410 |
aaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaa |
21311 |
T |
|
| Q |
103 |
agccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| || |||||||||||||||| |||||||||| |
|
|
| T |
21310 |
agccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaagatagctagcactctccaaacaaaacaatcctttgta |
21214 |
T |
|
| Q |
203 |
gaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatagttac |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21213 |
gaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaatagttac |
21142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39925817 - 39925548
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39925817 |
acaaataaagtaaaagagataaagg-atgagagaaaacgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
39925719 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
39925718 |
aaagccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaagatagcgagcactctccaaacaaaacaatcctttg |
39925622 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatagttac |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39925621 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaatagttac |
39925548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 3274450 - 3274188
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3274450 |
acaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagaa |
3274351 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
3274350 |
aaagccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaagatagcgagcactctccaaacaaaacaatcctttg |
3274254 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3274253 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaa |
3274188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 3277860 - 3277598
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3277860 |
acaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagaa |
3277761 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
3277760 |
aaagccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaagatagcgagcactctccaaacaaaacaatcctttg |
3277664 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3277663 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaa |
3277598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 5026893 - 5027162
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5026893 |
acaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
5026992 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||| ||||| || |||||||||||||||| |||||||| |
|
|
| T |
5026993 |
aaagccccttgagattttcactaacctagcttttaaacgggataagc---tagtaatctttacaagatagcaagcactctccaaacaaaacaatcctttg |
5027089 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatagtta |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
5027090 |
tagaagagcctctaaacctaagagatatcacctctcttgaaaccttgggatcgcacccaatataaaatagtta |
5027162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 6587580 - 6587469
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaag-aagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagg |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||| || || |||| | ||||||| |||||||| || || | |
|
|
| T |
6587580 |
acaaataaagtaaaagagataaagcaatgaaagaaaat-acacaagtaagtttatcctaatttatcccaaaataacaaggccgacgtctagcccgcacag |
6587482 |
T |
|
| Q |
100 |
aaaagccccttga |
112 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
6587481 |
aaaagctccttga |
6587469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 14404518 - 14404787
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404518 |
acaaataaagtaaaagagataaagg-atgagagaaaacgacacaagaagtttatcctaattcggcctaaaacaccaaggcctacgtctagtccccaagga |
14404616 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
14404617 |
aaagtcccttgagattttcactaacctagcttttaaacgggataagc---tagtaacctttacaagatagcgagcactctccaaacaaaacaatcctttg |
14404713 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatagttac |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14404714 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaaatagttac |
14404787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 3 - 270
Target Start/End: Original strand, 40665876 - 40666143
Alignment:
| Q |
3 |
aaataaagtaaaagagataaagggatgagagaaaat---gacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40665876 |
aaataaagtaaaagagataaagggatgagagaaaataatgacacaagaagtttatcctagttcggcctaaaacatcaaggcctacgtctagtccccaagg |
40665975 |
T |
|
| Q |
100 |
aaaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatccttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| ||||||| || ||||||||||||| ||||| ||||| |||||||||| ||| ||| |
|
|
| T |
40665976 |
aaaagccccttgagattttcactaacctaacttttaaacgggataagc---taataacctttacaaataagcgaacactcttcaaacaaaacaatcattt |
40666072 |
T |
|
| Q |
200 |
gtagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatag |
270 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40666073 |
gtagaagagcctctaaactcaagagatatcacctctcttgaaaccttgggatcacacccaatacaaaatag |
40666143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 25686070 - 25685831
Alignment:
| Q |
8 |
aagtaaaagagataaagggatgagagaaaatgacaca-agaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagcc |
106 |
Q |
| |
|
||||||||||| |||| ||||||| ||||| ||||| | |||||||||||||||| ||| ||||||||| || |||| |||||| | || ||||| || |
|
|
| T |
25686070 |
aagtaaaagagttaaaaggatgagggaaaa-gacaccgaaaagtttatcctagttctgcccaaaacaccatggtctacatctagttcttaaagaaaaacc |
25685972 |
T |
|
| Q |
107 |
ccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaag |
206 |
Q |
| |
|
| ||||||| ||||| || || || ||||| ||||| |||||| |||||||||| |||||||| || |||||||| ||| ||||||| ||||| |
|
|
| T |
25685971 |
tatcgagattt-cactatccaagattttaaacaggataatctagta---acctttacaagatagcgagcacactccaaacgaaattatcctttatagaaa |
25685876 |
T |
|
| Q |
207 |
agcctctaaacccaagagatatcacctctcttgaaaccttgggat |
251 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
25685875 |
agcctctaaatccaagagatatcacctctcttgaaatcttgggat |
25685831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 20356823 - 20356857
Alignment:
| Q |
3 |
aaataaagtaaaagagataaagggatgagagaaaa |
37 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
20356823 |
aaataaagtaaaagagataaagagatgagagaaaa |
20356857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 39038744 - 39038482
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39038744 |
acaagtaaagtaaaagagataaaggggtgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
39038645 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
39038644 |
aaagccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaagatagcgagcactctccaaacaaaacaatcctttg |
39038548 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39038547 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaa |
39038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 186271 - 186496
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
186271 |
acaagtaaagtaaaagagataaagggatgagagaaaaggacataagaagtttattctagttcagcctaaaacaccaaggtctacgtctagtccccaagga |
186370 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||| ||||| |||||| ||||||||||||||||| || ||||||||||||||| | ||||| |
|
|
| T |
186371 |
aaagccccttgagattttcactaacttagcttttatacgggataaactagta--aacctttacaaaatagcaagcactctccaaacaaaattacccttta |
186468 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatat |
228 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
186469 |
tagaagagcctctaaactcaagagatat |
186496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 186512 - 186560
Alignment:
| Q |
219 |
caagagatatcacctctcttgaaaccttgggattgcacccaatacaaaa |
267 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
186512 |
caagaaatatcacctctcttgaaactttgggatcgcacccaatacaaaa |
186560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 16851611 - 16851349
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16851611 |
acaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagtttggcctaaaacaccaaggcctacgtctagtccccaagaa |
16851512 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
16851511 |
aaagccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaagatagcgagcactctccaaacaaaacaatcctttg |
16851415 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16851414 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcacacccaatacaaa |
16851349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 52986786 - 52987051
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52986786 |
acaaataaagtaaaagagataaagggatgagagaaaaggacacaagaaatttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
52986885 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
52986886 |
aaagacccttgagattttcactaacttagcttttaaacgggataagc---tagtaacctttacaaaatagcgagcactctccaaacaaaattaccctttg |
52986982 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
52986983 |
tagaagagcctctaaacccaagagagatcacctctcttgaaactttgggattgcgcccaatacaaaata |
52987051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 21198643 - 21198381
Alignment:
| Q |
4 |
aataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198643 |
aataaagtaaaagagataaagggatgagaaaaaatgacacaacaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaa |
21198544 |
T |
|
| Q |
104 |
gccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
21198543 |
gccccttgagattttcactaacctagcttttaaacgggataagct---agtaacctttacaaatatgcgagcactcttcaaacaaaacaatcctttgtag |
21198447 |
T |
|
| Q |
204 |
aagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
21198446 |
aagagtctctaaactcaagagatatcacctctcttgaaactttgggatcgcaccctatacaaaata |
21198381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 17365152 - 17364907
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||||||||| ||||||| |||||||||||||||| ||||||||| ||||| ||| ||||||| || ||||| |
|
|
| T |
17365152 |
acaaatgaagtaaaagaggtgaaggggtgagagaaaa-gacacaa--agtttatcctagttcgacctaaaacaacaaggtcta-gtctagttcctaagga |
17365057 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctag-tagtaacctttacaaaatagcgagtactctccaaacaaaacgatccttt |
199 |
Q |
| |
|
||| |||| |||||||||||| | | ||||| ||| | ||||||||| |||||||||||||||| || |||| |||||||||||||||| ||| ||| |
|
|
| T |
17365056 |
aaataccctcgagattttcactgatcaagcttttaattaacataagctagctagtaacctttacaaa-taacgagcactctccaaacaaaacaatcattt |
17364958 |
T |
|
| Q |
200 |
gtagaagagcctctaaacccaagagatatcacctctcttgaaaccttggga |
250 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
17364957 |
gtagaagagtctctaaacctaagagatatcacctttctttaaaccttggga |
17364907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 50944222 - 50944333
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50944222 |
acaagtaaaataaaagagataaagggatgagagaaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
50944321 |
T |
|
| Q |
101 |
aaagccccttga |
112 |
Q |
| |
|
||| |||||||| |
|
|
| T |
50944322 |
aaatccccttga |
50944333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 39 - 274
Target Start/End: Original strand, 89093 - 89325
Alignment:
| Q |
39 |
gacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagccccttgagattttcactaacctagcttataaac |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
89093 |
gacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagccccttgagattttcactaacctagcttttaaac |
89192 |
T |
|
| Q |
139 |
gagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaagagcctctaaacccaagagatatcacctctctt |
238 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89193 |
gggataagctagt---aacctttacaagatagcgagcactctccaaacaaaacgatcctttgtagaagagcctctaaacccaagagatatcacctctctt |
89289 |
T |
|
| Q |
239 |
gaaaccttgggattgcacccaatacaaaatagttac |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
89290 |
gaaaccttgggattgcacccaatacaaaatagttac |
89325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 30726 - 30991
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30726 |
acaagtaaagtaaaagagataaagggatgagagaaaatgacacaagaaatttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
30825 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
30826 |
aaagccccttgagattttcactaacctagcttttaaacgggataagc---tagtaacctttacaaataagcgagcactcttcaaacaaaacaatcctttg |
30922 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30923 |
taaaagagtctctaaacccaagagatatcacctctcttgaaactttgggatcgcacccaatacaaaata |
30991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 20726897 - 20727162
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20726897 |
acaagtaaagtaaaagagataaagggatgagagaaaatgacacaagaaatttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
20726996 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
20726997 |
aaagccccttgagattttcactaacctagcttttaaacgggataagc---tagtaacctttacaaataagcgagcactcttcaaacaaaacaatcctttg |
20727093 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
20727094 |
taaaagagtctctaaacccaagagatatcacctctcttgaaactttgggatcgcacccaatacaaaata |
20727162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24780356 - 24780252
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780356 |
acaagtaaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
24780257 |
T |
|
| Q |
101 |
aaagc |
105 |
Q |
| |
|
|||| |
|
|
| T |
24780256 |
taagc |
24780252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 11023698 - 11023454
Alignment:
| Q |
2 |
caaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaa |
101 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
11023698 |
caaatgaagtaaaagagatagagggatgagagaaaatgacataagaagtttatcttagttcgacctaaaacatcaaggcctatgtctagtccccaagaaa |
11023599 |
T |
|
| Q |
102 |
aagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgt |
201 |
Q |
| |
|
|| || ||||||||||| ||| | | ||||| ||| ||||||| ||||||| ||||| ||||| ||| ||||| |||||||||| || |||||| |
|
|
| T |
11023598 |
aatccgcttgagatttttactgatc-agcttttaaggaggataagc---tagtaacatttac-aaataatgagcactcttcaaacaaaacaattctttgt |
11023504 |
T |
|
| Q |
202 |
agaagagcctctaaacccaagagatatcacctctcttgaaaccttgggat |
251 |
Q |
| |
|
| ||||| ||||||| |||||| |||| || ||||||||||||||||||| |
|
|
| T |
11023503 |
aaaagagtctctaaaaccaagatatataacttctcttgaaaccttgggat |
11023454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 24780251 - 24780133
Alignment:
| Q |
151 |
tagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaagagcctctaaacccaagagatatcacctctcttgaaaccttggga |
250 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
24780251 |
tagtaacctttacaagatagcgaacactctccaaacaaaacaatcatttgtagaagagcctctaaactcaagagatatcacctctcttgatactttggga |
24780152 |
T |
|
| Q |
251 |
ttgcacccaatacaaaata |
269 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
24780151 |
tcgcacccaatacaaaata |
24780133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 112938 - 113204
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112938 |
acaagtaaaataaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
113037 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
113038 |
aaagtcccttgagattttcactaacctagcttttaaacgggataagc---tagtaacctttataaataagcgagcactcttcaaacaaaacaatcctttg |
113134 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatag |
270 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
113135 |
tagaagagtctcttaacccaagagatatcacctctcttgaaactttgggatcacacccaatacaaaatag |
113204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 55 - 270
Target Start/End: Original strand, 353712 - 353924
Alignment:
| Q |
55 |
cctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagccccttgagattttcactaacctagcttataaacgagataagctagtagt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
353712 |
cctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagccccttgagattttcactaacctagcttttaaacaggataagctagt--- |
353808 |
T |
|
| Q |
155 |
aacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgc |
254 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
353809 |
aacctttacaagatagcgagcactctccaaacaaaacaatcctttgtagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggatcgc |
353908 |
T |
|
| Q |
255 |
acccaatacaaaatag |
270 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
353909 |
acccaatacaaaatag |
353924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 9401 - 9135
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9401 |
acaagtaaagtaaaagagataaagggatgagagaaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaagga |
9302 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| || |||||||| ||||||||||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
9301 |
aaagccccttgagattttcattaacctagcttttaatcgggataagct---agtaacctttacaaataagcgagcactcttcaaacaaaacaatcctttg |
9205 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatag |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
9204 |
tagaagagcctctaaacccaaaagatatcgcctctcttaaaaccttgggaacacacccaatacaaaatag |
9135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 115 - 381
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115 |
acaagtaaaatagaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
214 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||||| | | || ||||| |||||||||| |||||||| |
|
|
| T |
215 |
aaagccccttgagattttcattaacctagcttttaaacgggataagc---cagtaacctttacaaataaacaagcactcttcaaacaaaacaatcctttg |
311 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatag |
270 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
312 |
tagaagagcttctaaacccaagagatatcacatctcttgaaaccttgagatcacacccaatacaagatag |
381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 3288 - 3022
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3288 |
acaagtaaaatagaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
3189 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||||| | | || ||||| |||||||||| |||||||| |
|
|
| T |
3188 |
aaagccccttgagattttcattaacctagcttttaaacgggataagc---cagtaacctttacaaataaacaagcactcttcaaacaaaacaatcctttg |
3092 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaatag |
270 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
3091 |
tagaagagcttctaaacccaagagatatcacatctcttgaaaccttgagatcacacccaatacaagatag |
3022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1744 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold1744
Description:
Target: scaffold1744; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 163 - 427
Alignment:
| Q |
3 |
aaataaagtaaaagagataaagggatgagaga-aaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaa |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163 |
aaataaagtaaaagagattaagggatgagagagaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaa |
262 |
T |
|
| Q |
102 |
aagccccttgagattttcactaacctagc-ttataaacgagataagctagtagtaacctttacaaaa-tagcgagtactctccaaacaaaacgatccttt |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||| | ||||| |
|
|
| T |
263 |
aagccccttgagattttcactaacttagctttttaaacgggataagc---tagtaacctttacaaaattagcgagcactctccaaacaaaattacccttt |
359 |
T |
|
| Q |
200 |
gtagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaa |
267 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
360 |
gtagaagagcctctaaactcaagagatatcacctctcttgaaactttgggatcacacccaacacaaaa |
427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 12352729 - 12352468
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12352729 |
acaagtaaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
12352630 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| |||||| ||||| |||||||||| |||||||| |
|
|
| T |
12352629 |
aaagtcccttgagattttcactaacctagcttttaaacgggataagctagtaaca----ttacaaataagcgagcactcttcaaacaaaacaatcctttg |
12352534 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
12352533 |
---aagagtctctaaacccaagagatatcacctctcttgaaactttgggatcacacccaatacaaaata |
12352468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 18677769 - 18677504
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||| ||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18677769 |
acaaataaattaaaagagataaatggatgagagaaactgacgcaagatgtttatcctaattcagcctaaaacaccacggcctacgtctagtccccaagga |
18677670 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||| | |||| ||||| |||||||||| | |||||| |
|
|
| T |
18677669 |
aaagccccttgagattttcactaacctagcttttaaacgggataagctagtaata---tttacaaataaacgagcactcttcaaacaaaacaaacctttg |
18677573 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
18677572 |
tagaagagtctctaaacccaagagatatcacctctcttgaaactttgggatcacacccaatacaaaata |
18677504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 14859388 - 14859133
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14859388 |
acaagtaaagtaaaagagataatgg-atgagagaaaatgacacaagaagtttatcttagtttggcctaaaacaccaagacctacgtctagtccccaagga |
14859290 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||| |||| |||||||||| |||| | |||| ||||| |||||||||| | || |
|
|
| T |
14859289 |
aaagcctcttgagattttcactaacctaacttttaaacgggata-------agtaacctttgcaaataaacgagcactcttcaaacaaaacaa-----tg |
14859202 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
14859201 |
aagatgagtctctaaacccaagagatatcacctctcttgaaacttagggatcacacccaatacaaaata |
14859133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 24170629 - 24170367
Alignment:
| Q |
5 |
ataaagtaaaagagataaagggatgagagaaaatgacac-aagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaa-ggaaa |
102 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||| || ||||||| ||||||||| || ||||||||| ||| ||||||||||||| || ||||| |
|
|
| T |
24170629 |
ataaagtaaaagagataaaaggatgaggaaaaaaaacaccaaaaagtttaccctagttcgacccaaaacaccatggc-tacgtctagtccctaaaggaaa |
24170531 |
T |
|
| Q |
103 |
agccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgta |
202 |
Q |
| |
|
| |||||||||||||||||||||| | ||| ||||| |||||| ||| ||||||||||||||| ||||| || |||| |||||||||| ||||||| || |
|
|
| T |
24170530 |
aaccccttgagattttcactaaccaaacttttaaacaagataaacta-tagtaacctttacaagatagctagcactccccaaacaaaattatcctttata |
24170432 |
T |
|
| Q |
203 |
gaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaa |
267 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||| |||||||||| |||| ||||| ||||||||| |
|
|
| T |
24170431 |
gaagaacctttaaacccaagatatatcacctcttttgaaaccttaggatcgcacctaatacaaaa |
24170367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 37440007 - 37439750
Alignment:
| Q |
9 |
agtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagcccc |
108 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
37440007 |
agtaaaagggataaaggaatgagagaaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagttcccaaggaaaagaccc |
37439908 |
T |
|
| Q |
109 |
ttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaagag |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
37439907 |
ttgagattttcactaacctagcttttaaacaggataagct---agtaacctttacaaataagcgagcactcttcaaacaaaataatcctttgtagaagag |
37439811 |
T |
|
| Q |
209 |
cctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
37439810 |
tctctaaacccaagagatatcacctctcttgaaaatttgggatcgcacacaatacaaaata |
37439750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 54001307 - 54001559
Alignment:
| Q |
12 |
aaaagagataaagggatgagagaaaatgacacaagaag-tttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagcccctt |
110 |
Q |
| |
|
|||| ||||||||||||||| ||| | ||||| | ||| ||||||||||||| |||||||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
54001307 |
aaaaaagataaagggatgagcgaaga-gacaccaaaagatttatcctagttcaacctaaaacaccaag-cttacgtctaatcctcaaggaaaagcccctt |
54001404 |
T |
|
| Q |
111 |
gagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaagagcc |
210 |
Q |
| |
|
||||||||| | | | ||| |||| ||||||||| || |||||| |||| || |||| | |||||||||||||| ||| ||||||||||| |
|
|
| T |
54001405 |
aagattttcaaggatcaaacttttaaataggataagctaata---acctttccaaa-taacgagcattctccaaacaaaacaatcatttgtagaagactt |
54001500 |
T |
|
| Q |
211 |
tctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaata |
269 |
Q |
| |
|
|||||| |||||||||||||| |||| || ||||||| ||| ||||||||||| ||||| |
|
|
| T |
54001501 |
tctaaaaccaagagatatcacatctcatggaaccttgagatcgcacccaataccaaata |
54001559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 39072741 - 39072789
Alignment:
| Q |
218 |
ccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
39072741 |
ccaagagatatcacctcttttgaaactttgggatcgcatccaatacaaa |
39072789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 5285405 - 5285439
Alignment:
| Q |
3 |
aaataaagtaaaagagataaagggatgagagaaaa |
37 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
5285405 |
aaataaagtaaaagagataaagagatgagagaaaa |
5285439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 8827387 - 8827127
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
8827387 |
acaaataaagtaaaagagataaatggatgagagaaaaagacacaagaattttatcctagttcggcccaaaacaccaaggcctatgtctagtccccaaaga |
8827288 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
||| |||||||||||||||||| || ||||| |||| || |||| |||||| |||||||||||| |||| | ||||||||||||| ||| |||| |
|
|
| T |
8827287 |
aaa-acccttgagattttcactagccaagcttttaaataggagaagc---tagtaaactttacaaaata-cgagcattctccaaacaaaaatatcttttg |
8827193 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| || |||| |||| |||| |
|
|
| T |
8827192 |
tagaagagcctataaacccaagagatatcacctctcttgaaatcttggaatcgcacacaatgcaaa |
8827127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 15890700 - 15890443
Alignment:
| Q |
1 |
acaaataaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaagga |
100 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||| |||||| || |||||| ||||||||| |
|
|
| T |
15890700 |
acaaataaagcaagagagataaagggataagagaaaa-gacac--gaagtttatactagttcggcctaaaacaacaaggctta-gtctagcccccaagga |
15890605 |
T |
|
| Q |
101 |
aaagccccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttg |
200 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| ||| |||||||||||| ||||||||||| || |||| |||||||||||||||| ||||||| |
|
|
| T |
15890604 |
aaagtcccttgagattttcactgctcaagcttttaattaggataagctagta---acctttacaaa-taacgagcactctccaaacaaaacagtcctttg |
15890509 |
T |
|
| Q |
201 |
tagaagagcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaa |
266 |
Q |
| |
|
|| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15890508 |
taaaagagtctctaaaaccaagagatatcacctctcttgaaaccttgggatcgcacccaatacaaa |
15890443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 267
Target Start/End: Complemental strand, 46467849 - 46467693
Alignment:
| Q |
107 |
ccttgagattttcactaacctagcttataaacgagataagctagtagtaacctttacaaaatagcgagtactctccaaacaaaacgatcctttgtagaag |
206 |
Q |
| |
|
|||| ||||||||||||||| | ||| ||||| ||||| |||||| ||||||| ||| || ||| |||||||||||||||| || |||||||| | |
|
|
| T |
46467849 |
ccttaagattttcactaaccaaacttttaaacaggataaactagta---acctttataaa-taatgagcactctccaaacaaaacaatgctttgtaggat |
46467754 |
T |
|
| Q |
207 |
agcctctaaacccaagagatatcacctctcttgaaaccttgggattgcacccaatacaaaa |
267 |
Q |
| |
|
|| ||||||| | ||||||||||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
46467753 |
agtctctaaaactaagagatatcacctctcttaaaaccttgagatcgcacccaatacaaaa |
46467693 |
T |
|
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