View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16819_low_5 (Length: 270)
Name: NF16819_low_5
Description: NF16819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16819_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 8176698 - 8176954
Alignment:
| Q |
8 |
catcatcaccaacacaacccatcttctcaattcacttcgaaaacagtttttgatgaaaattgcaaacaattaaagcgcaatgttgttcctatggagaata |
107 |
Q |
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| T |
8176698 |
catcatcaccaacacaacccatcttctcaattcacttcaaaaacagtttttgatgaaaattgcaaacaattaaagcgcaatgttcttcctacggagaata |
8176797 |
T |
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| Q |
108 |
aagctttcaactttttcaacccactaacaaatttcttcaaaaataagcaactgggtcatggaatttcttgcggaattcatcaaaaatgttattatggttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8176798 |
aagctttcaactttttcaacccactaacaaatttcttcaaaaataagcaactgggtcatggaatttcttgcggaattcttcaaaaatgttattatggttc |
8176897 |
T |
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| Q |
208 |
aatgggtggtgctgttcaaagaagttccagattctcagagttgaatgatgatgatgt |
264 |
Q |
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| T |
8176898 |
aatgggtggtgctgttcaaagaagttccagattctcagagttgaatgatgatgatgt |
8176954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 45512172 - 45512114
Alignment:
| Q |
8 |
catcatcaccaacacaacccatcttctcaattcacttcgaaaacagtttttgatgaaaa |
66 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45512172 |
catcatcagcaacacaacccatcttctcaattcacttcaaaaacagtttttgatgaaaa |
45512114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 32133959 - 32134015
Alignment:
| Q |
8 |
catcatcaccaacacaacccatcttctcaattcacttcgaaaacagtttttgatgaa |
64 |
Q |
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|||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||| |
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| T |
32133959 |
catcatcagcaacatagcccatcttctcaattcacttcaaaaacagtttttgatgaa |
32134015 |
T |
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