View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1682-Insertion-1 (Length: 667)
Name: NF1682-Insertion-1
Description: NF1682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1682-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Complemental strand, 45945177 - 45944574
Alignment:
| Q |
8 |
agtcccatatacatgatcaaatgtaaaaccgttgtaaggcaaaatccctgcttcaagtaaaccgtccctaactgctgattgccattgaagcattgaaggc |
107 |
Q |
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| T |
45945177 |
agtcccatatacatgatcaaatgtaaaaccgttgtaaggcaaaatccctgcttcaagtaaaccgtccctaactgctgattgccattgaagcattgaaggc |
45945078 |
T |
|
| Q |
108 |
tcaaaaacaaccttcttttcaacccactcgtatgaactcctggccaaagtttcattccaaccaaattctcttatgtacttataactagcccttgagtata |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45945077 |
tcaaaaacaaccttcttttcaacccactcgtatgaactcctggccaaagtttcattccaaccaaattctcttatgtacttataactagcccttgagtaga |
45944978 |
T |
|
| Q |
208 |
atcta---cccaggacagaaccgccgcctaagacacgtgcacgcgtattgtatacaccatcggttgatatgaatacttgtgaaaatgatgaaggacgtat |
304 |
Q |
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||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45944977 |
atccagcacccacgacagaaccgccgcctaagacacgtgcacgcgtattgtatacaccatcggttgatatgaatacttgtgaaaatgatgaaggacttat |
45944878 |
T |
|
| Q |
305 |
atcaaaaagggtattaacaaagttatgtatgttgatctgttctggatttgtatacggtgaacctcctctttcaaggactaaaacttttccaccttgtgaa |
404 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45944877 |
attaaaaagggcattaacaaagttatgtatgttgatctgttctggatttgtatatggtgaacctcctctttcaaggactaaaacttttccaccttgtgaa |
45944778 |
T |
|
| Q |
405 |
agtgttgctgctagtggacaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgtggcttctttgataaatgtgt |
504 |
Q |
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| T |
45944777 |
agtgttgctgctagtggacaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgtggcttctttgataaatgtgt |
45944678 |
T |
|
| Q |
505 |
acattggtgctgcattgacacacagaagaaaagaaaataaagatcacataaaatgactcataacatccaaagagattcaaagagacgctacataactgcc |
604 |
Q |
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| T |
45944677 |
acattggtgctgcattga--cacagaagaaaa-aaaataaagatcacataaaatgactcataacatcaaaagagattcaaagagacgctacataactacc |
45944581 |
T |
|
| Q |
605 |
taataat |
611 |
Q |
| |
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| ||||| |
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| T |
45944580 |
ttataat |
45944574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 45938413 - 45937928
Alignment:
| Q |
8 |
agtcccatatacatgatcaaatgtaaaaccgttgtaaggcaaaatccctgcttcaagtaaaccgtccctaactgctgattgccattgaagcattgaaggc |
107 |
Q |
| |
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||||||||| | |||||||| | |||||| |||||||| |||| |||||||||| ||||||| ||||| |||||||||| |||||| | |||| |||| |
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| T |
45938413 |
agtcccatacaagtgatcaaaagcaaaaccattgtaaggtaaaacccctgcttcaggtaaaccatccctcactgctgattaccattgcatcatttgaggc |
45938314 |
T |
|
| Q |
108 |
tcaaaaacaaccttcttttcaacccactcgtatgaactcctggccaaagtttcattccaaccaaattctcttatgtacttataactagcccttgagtata |
207 |
Q |
| |
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|||||| ||||||||||||||| ||| || |||||| || | ||||||||||||||||||||| | ||||||||||| |||| |||||||||||||| | |
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| T |
45938313 |
tcaaaagcaaccttcttttcaatccattcatatgaaatcttagccaaagtttcattccaaccagaatctcttatgtaactatagctagcccttgagtaga |
45938214 |
T |
|
| Q |
208 |
atctacc---caggacagaaccgccgcctaagacacgtgcacgcgtattgtatacaccatcggttgatatgaatacttgtgaaaatgatgaaggacgtat |
304 |
Q |
| |
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||| | | || ||||||||| || |||| ||| || || || | |||| ||||| || || ||||||||| ||| |||||||||||||||| | | |
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| T |
45938213 |
atccagcattcaagacagaaccacctcctaggacccgcgctcgagaattgaggacaccgtcagtcgatatgaattgttgggaaaatgatgaaggacttgt |
45938114 |
T |
|
| Q |
305 |
atcaaaaagggtattaacaaagttatgtatgttgatctgttctggatttgtatacggtgaacctcctctttcaaggactaaaacttttccaccttgtgaa |
404 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
45938113 |
gtcagcaagggaattaacaaagttatgtatgttgatctgttctggatttgtatatggtgaacctcctctttcaaggactaaaa------------gtgaa |
45938026 |
T |
|
| Q |
405 |
agtgttgctgctagtggacaaccacatgttcctccaccaattactatataatcatatgttaagattggaggagcaaatgtggcttctttgataaatgt |
502 |
Q |
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|||||||| || ||||||||||||||||||||||| || || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
45938025 |
agtgttgcggcaagtggacaaccacatgttcctccccctatgactatatagtcatatgttaagattggtggagcaaatgttgcttctttgataaatgt |
45937928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 35650449 - 35650518
Alignment:
| Q |
494 |
gataaatgtgtacattggtgctgcattgacacacagaagaaaagaaaataaagatcacataaaatgactc |
563 |
Q |
| |
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|||||||||||| ||||||| |||||||||||| | || |||| |||||| ||||| ||||||||||||| |
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| T |
35650449 |
gataaatgtgtatattggtgttgcattgacacaaaaaaaaaaaaaaaatatagatcgcataaaatgactc |
35650518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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