View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16820_high_11 (Length: 218)

Name: NF16820_high_11
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16820_high_11
NF16820_high_11
[»] chr5 (2 HSPs)
chr5 (17-201)||(12277538-12277722)
chr5 (48-94)||(32123244-32123290)
[»] chr1 (3 HSPs)
chr1 (23-114)||(8720540-8720631)
chr1 (48-92)||(19587002-19587046)
chr1 (48-92)||(28060730-28060774)
[»] chr4 (3 HSPs)
chr4 (45-99)||(1611236-1611290)
chr4 (47-93)||(31719291-31719337)
chr4 (45-93)||(26728494-26728542)
[»] chr2 (1 HSPs)
chr2 (48-92)||(15316227-15316271)
[»] chr7 (1 HSPs)
chr7 (50-97)||(26364851-26364898)
[»] chr3 (3 HSPs)
chr3 (47-90)||(20749006-20749049)
chr3 (47-94)||(21942491-21942538)
chr3 (48-92)||(28517449-28517493)
[»] chr6 (2 HSPs)
chr6 (48-81)||(3077846-3077879)
chr6 (48-97)||(15858141-15858190)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12277722 - 12277538
Alignment:
Q  17 agaggttgggagaggggagtgtttaaggatatttggaaaagtccggctccgtcaaaggtggtggctttctcttggaagcttttatatgatcggattccaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12277722 agaggttgggagaggggagtgtttaaggatatttggaaaagtcaggctccgtcaaaggtggtggctttctcttgaaagcttttatatgatcggattccaa 12277623  T
Q  117 ctcggaggaatctcaccttgagaaatgctcttccgccggacgctccgttgttgtgtgtactttgcgatagcacggaagaatcatc 201  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12277622 ctcggaggaatctcgccttgagaaatgctcttccgccggacgctccgttgttgtgtgtactttgcgatagcgcggaagaatcatc 12277538  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 32123290 - 32123244
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggctttctcttggaag 94  Q
    ||||||| |||| |||||| || ||||||||||||||||||||||||    
T  32123290 tttggaagagtctggctccctccaaggtggtggctttctcttggaag 32123244  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 8720540 - 8720631
Alignment:
Q  23 tgggagaggggagtgtttaaggatatttggaaaagtccggctccgtcaaaggtggtggctttctcttggaagcttttatatgatcggattcc 114  Q
    |||||||||||||||||||||||||||||| |||||||||| || || |||||||||||||| || ||||||||| | |||||  |||||||    
T  8720540 tgggagaggggagtgtttaaggatatttgggaaagtccggcgccttctaaggtggtggctttttcgtggaagcttctttatgactggattcc 8720631  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 19587046 - 19587002
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggctttctcttgga 92  Q
    ||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  19587046 tttggaagagtccggcgccgtctaaggtggtggcattctcttgga 19587002  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 28060774 - 28060730
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggctttctcttgga 92  Q
    ||||||| ||||||||||||||||| | |||||| ||||||||||    
T  28060774 tttggaagagtccggctccgtcaaaagcggtggccttctcttgga 28060730  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1611236 - 1611290
Alignment:
Q  45 atatttggaaaagtccggctccgtcaaaggtggtggctttctcttggaagctttt 99  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||||||||||||    
T  1611236 atatttggaaaagtccggcaccgtccaaagtggtggccttctcttggaagctttt 1611290  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 31719291 - 31719337
Alignment:
Q  47 atttggaaaagtccggctccgtcaaaggtggtggctttctcttggaa 93  Q
    |||||| ||||||||| |||||||||||| || ||||||||||||||    
T  31719291 atttggcaaagtccggttccgtcaaaggtagtagctttctcttggaa 31719337  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 26728494 - 26728542
Alignment:
Q  45 atatttggaaaagtccggctccgtcaaaggtggtggctttctcttggaa 93  Q
    ||||||||||||||||||||||||| || ||||| |  |||||||||||    
T  26728494 atatttggaaaagtccggctccgtctaaagtggtagaattctcttggaa 26728542  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 15316227 - 15316271
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggctttctcttgga 92  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  15316227 tttggaaaagtccggctccgtctaaggttgtggctttctcttgga 15316271  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 26364851 - 26364898
Alignment:
Q  50 tggaaaagtccggctccgtcaaaggtggtggctttctcttggaagctt 97  Q
    |||||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  26364851 tggaaaagtctggcgccgtcaagggtggtggctttttcttggaagctt 26364898  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 20749049 - 20749006
Alignment:
Q  47 atttggaaaagtccggctccgtcaaaggtggtggctttctcttg 90  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||    
T  20749049 attttgaaaagtccggcttcgtcaaaggttgtggctttctcttg 20749006  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 21942538 - 21942491
Alignment:
Q  47 atttggaaaagtccggctccgtcaaaggtggtggctttctcttggaag 94  Q
    ||||||||||| ||||||||||| || ||||| |||||||||||||||    
T  21942538 atttggaaaagcccggctccgtctaaagtggtcgctttctcttggaag 21942491  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 28517493 - 28517449
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggctttctcttgga 92  Q
    ||||||| |||||||  ||||| ||||||||||||||||||||||    
T  28517493 tttggaacagtccggtaccgtccaaggtggtggctttctcttgga 28517449  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 3077879 - 3077846
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggc 81  Q
    |||||||||||||||||||||| |||||||||||    
T  3077879 tttggaaaagtccggctccgtctaaggtggtggc 3077846  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 15858141 - 15858190
Alignment:
Q  48 tttggaaaagtccggctccgtcaaaggtggtggctttctcttggaagctt 97  Q
    |||||||||||||||| ||||| || || ||||| |||||||||||||||    
T  15858141 tttggaaaagtccggcaccgtctaaagttgtggcattctcttggaagctt 15858190  T

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