View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_high_7 (Length: 341)
Name: NF16820_high_7
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 29028564 - 29028368
Alignment:
| Q |
21 |
aaccgaccctaattaaacgtattcagatatgtata--ccatagatactcacttctagctcgacaatttatgttcctggtgactcccaccgttgagtagca |
118 |
Q |
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| T |
29028564 |
aaccgaacctaattaaacatattcagatatatatataccatagatactcacttctagctcgggaatttaagttcatggtgactcccaccgttgagtagca |
29028465 |
T |
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| Q |
119 |
gaaccatttacaagtttgaatcaaatattataacaacacgacaacaaacaacaatgatagaatgaacaagaataaccttttcgatataaaacacaat |
215 |
Q |
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| T |
29028464 |
gaaccatttacaagtttgaatcaaatattataacaacacgacaacaaacaacaatgatagaatgaacaagaataaccttttcgatataaaacacaat |
29028368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 29026751 - 29026674
Alignment:
| Q |
251 |
cttcgttgtttcaaaaataaagatccacc----tctctaaagtacagcatgtttactttcaatttatttttattttcat |
325 |
Q |
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| T |
29026751 |
cttcgttgtttcaaaaacaaagaaccacccacctctctaaagtag-gcatgtttacttccaatttaatttaattttcat |
29026674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 36069568 - 36069504
Alignment:
| Q |
24 |
cgaccctaattaaacgtattcagatatgtataccatagatactcacttctagctcgacaatttat |
88 |
Q |
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| T |
36069568 |
cgaccctaattaaacctaatcatatatgtataccatagatactcacttttagctctgcaatttat |
36069504 |
T |
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