View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_low_1 (Length: 581)
Name: NF16820_low_1
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 563
Target Start/End: Original strand, 29524256 - 29524802
Alignment:
| Q |
15 |
tgataagaaaactcagatcataagaggttttccgagacacaagtgatttacattaaagaatttgcattaattttgaagatctggaatcaatttctcccaa |
114 |
Q |
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| T |
29524256 |
tgataagaaaactcagatcataagaggttttctgaaaca--agtcatttacactaaagaatttgcattaattttgaagatccggaatcaacttctcccaa |
29524353 |
T |
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| Q |
115 |
acgattggttcttgacagcccgaattactcttttaattacataaattttctcataaaattctctcatcctaacacactctataagcaccctccgcacaaa |
214 |
Q |
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| T |
29524354 |
acgattggttcttgacaggctgaattactcttttaattacataaattttcttataaaattctctcatcctaacacactctataagcaccctccgcacaaa |
29524453 |
T |
|
| Q |
215 |
ctcaatctctttgatttatgataaaccttacaaattttttgttacattgtagactttgca-agctggtacagaggaagtttctcagacttcaaattggga |
313 |
Q |
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| T |
29524454 |
ctcaatgtctttgatttatgataaaccttactaaattctttttacattgcaggaattgcagagttgtgtcactg-aagtttctcatacttcaaattggga |
29524552 |
T |
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| Q |
314 |
tttttcgacattgctgacttcaaaaagggtttttaacgccaacataatgtggagactagttggaattgtgtcaagtgtagtagccctattatgtaatgct |
413 |
Q |
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| T |
29524553 |
ctttcggacattgctgacttcaaaaagggtttttaataccaacgtaatgtggagaatagttggaattgtgtcaagtgtagtaggcctattatgtaatgct |
29524652 |
T |
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| Q |
414 |
cagagcccttctttcaatcatttaattggaaaatggagcactctcaagttatttctgtatggggtgttttccttggctatctttactaccatgttgtttg |
513 |
Q |
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| T |
29524653 |
cagagccattctttcaatcgtttcattggaaaatggaacactctcaagttctttctgtatggggtgttttccttggttatctttactaccatgttgtttg |
29524752 |
T |
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| Q |
514 |
taaagccgttctcaacatccacacgatatggtcatataaaaccctacacg |
563 |
Q |
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| T |
29524753 |
taaagccgttctcaacatccacacgatatggtcatataaaaccctacacg |
29524802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 363 - 536
Target Start/End: Original strand, 29612391 - 29612564
Alignment:
| Q |
363 |
tggagactagttggaattgtgtcaagtgtagtagccctattatgtaatgctcagagcccttctttcaatcatttaattggaaaatggagcactctcaagt |
462 |
Q |
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|||||||||||||| |||||||||||||| | | |||||| ||| |||||||||||||||||||||||| ||||||||||| ||||| || | |||||| |
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| T |
29612391 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaacattgtcaagt |
29612490 |
T |
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| Q |
463 |
tatttctgtatggggtgttttccttggctatctttactaccatgttgtttgtaaagccgttctcaacatccaca |
536 |
Q |
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| T |
29612491 |
tctctctgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagttctcaccatccaca |
29612564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 29529078 - 29528996
Alignment:
| Q |
362 |
gtggagactagttggaattgtgtcaagtgtagtagccctattatgtaatgctcagagcccttctttcaatcatttaattggaa |
444 |
Q |
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| T |
29529078 |
gtggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaa |
29528996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 513
Target Start/End: Complemental strand, 29475355 - 29475251
Alignment:
| Q |
409 |
atgctcagagcccttctttcaatcatttaattggaaaatggagcactctcaagttatttctgtatggggtgttttccttggctatctttactaccatgtt |
508 |
Q |
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| T |
29475355 |
atgctctgagcccttctttcaatcgattaattggaaaattgaaagctttccagatctttctttatggggtgttgtccttagctatcttcaccaccatatt |
29475256 |
T |
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| Q |
509 |
gtttg |
513 |
Q |
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||||| |
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| T |
29475255 |
gtttg |
29475251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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