View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_low_10 (Length: 298)
Name: NF16820_low_10
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 46184302 - 46184557
Alignment:
| Q |
14 |
gaagcttgatttcgcttagnnnnnnnncaatgaaccgaatgacatgctataagacaaactaactggtcctgccagaaatgtctgattgcaaaactaaaaa |
113 |
Q |
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| T |
46184302 |
gaagcttgatttcgcttagaaaaaaaacaatgaaccgaatgacatgctataagacaaactaactggtcctgccagaaatgtctgattgcaaaactaaaaa |
46184401 |
T |
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| Q |
114 |
taaatgctcttgcctta-nnnnnnncacggttcctattgatgccaatacatgaatgaaaaagtcagagtgtgatagcatagcattgatccacctgatatg |
212 |
Q |
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| T |
46184402 |
taaatgctcttgccttattttttttcacggttcctattgatgccaatac----atgaaaaagtcagtgt-------tatagcattgatccacctgatatg |
46184490 |
T |
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| Q |
213 |
agggaacctaaacaaaacaaaaccccatttcccacctctaatccttccacgtacacaacttgcatgt |
279 |
Q |
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| T |
46184491 |
agggaacctaaacaaaacaaaaccccatttcccacctctattccttccacgtacacaacttgcatgt |
46184557 |
T |
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