View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16820_low_14 (Length: 207)
Name: NF16820_low_14
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 52604981 - 52604802
Alignment:
| Q |
11 |
ggagcagagaagaagaacagtagtagtgtggcagtacttgatgatgatgttcacaaatgcaaccacaaaagaaaacacttgtcttcttgctacaacaaca |
110 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52604981 |
ggagcaaagaagaagaacagtagcagtgtggcagtacttgatgatgatgttcacaaatgcaaccacaaaagaaaacacttgtcttcttgctacaacaaca |
52604882 |
T |
|
| Q |
111 |
cgtcatcatcagaggacaaaagggttgttcctacaggtccaaatccactacacaacaggtagtaaagtcatcaacgtttt |
190 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52604881 |
cgtcatcatcagaggacaaaagggtcgttcctacaggtccaaatccactacacaacaggtagtaaagtcatcaacgtttt |
52604802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 16905748 - 16905712
Alignment:
| Q |
136 |
tgttcctacaggtccaaatccactacacaacaggtag |
172 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
16905748 |
tgttcctacaggtccaaatccattacataacaggtag |
16905712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University