View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16820_low_3 (Length: 505)

Name: NF16820_low_3
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16820_low_3
NF16820_low_3
[»] chr2 (26 HSPs)
chr2 (1-490)||(31222214-31222716)
chr2 (1-48)||(31183652-31183699)
chr2 (271-354)||(37769978-37770061)
chr2 (272-354)||(2324207-2324289)
chr2 (272-354)||(2324441-2324523)
chr2 (272-387)||(29718295-29718411)
chr2 (272-354)||(32884074-32884156)
chr2 (272-393)||(13486300-13486423)
chr2 (272-354)||(5509280-5509362)
chr2 (272-338)||(36316102-36316168)
chr2 (1-37)||(31202674-31202710)
chr2 (272-339)||(1926491-1926558)
chr2 (272-339)||(8424855-8424922)
chr2 (271-354)||(28407828-28407911)
chr2 (272-354)||(15124583-15124665)
chr2 (272-389)||(19191609-19191727)
chr2 (272-330)||(27036471-27036529)
chr2 (274-339)||(5509048-5509113)
chr2 (272-387)||(21591748-21591865)
chr2 (272-387)||(16419469-16419585)
chr2 (272-327)||(27897667-27897722)
chr2 (272-389)||(17854691-17854809)
chr2 (272-354)||(17854964-17855046)
chr2 (305-354)||(14927293-14927342)
chr2 (272-387)||(5711440-5711556)
chr2 (300-364)||(17525363-17525427)
[»] chr4 (30 HSPs)
chr4 (270-387)||(53828524-53828642)
chr4 (272-390)||(9685599-9685718)
chr4 (272-389)||(20821940-20822058)
chr4 (272-389)||(21498762-21498880)
chr4 (272-387)||(53828290-53828406)
chr4 (272-354)||(5846113-5846195)
chr4 (272-354)||(5846346-5846428)
chr4 (272-389)||(9685365-9685483)
chr4 (272-354)||(21498321-21498403)
chr4 (272-354)||(12869064-12869146)
chr4 (271-387)||(22863440-22863557)
chr4 (272-337)||(54055084-54055149)
chr4 (270-389)||(14783186-14783306)
chr4 (272-339)||(53814979-53815046)
chr4 (272-370)||(35819147-35819245)
chr4 (267-387)||(25052814-25052935)
chr4 (272-387)||(1518131-1518247)
chr4 (272-387)||(22231074-22231190)
chr4 (272-339)||(980100-980167)
chr4 (305-387)||(17111768-17111851)
chr4 (305-387)||(35788659-35788742)
chr4 (272-394)||(54054799-54054922)
chr4 (272-338)||(11103947-11104013)
chr4 (305-389)||(53814673-53814758)
chr4 (300-387)||(400566-400654)
chr4 (304-387)||(12869264-12869348)
chr4 (303-367)||(28246107-28246171)
chr4 (272-387)||(35788861-35788977)
chr4 (272-387)||(40717442-40717558)
chr4 (300-387)||(50543331-50543419)
[»] chr6 (20 HSPs)
chr6 (272-391)||(27656425-27656545)
chr6 (272-389)||(21690689-21690807)
chr6 (271-389)||(27653183-27653302)
chr6 (272-389)||(27772913-27773031)
chr6 (272-387)||(19712919-19713035)
chr6 (271-354)||(27772680-27772763)
chr6 (272-389)||(8026356-8026474)
chr6 (272-338)||(15600903-15600969)
chr6 (272-354)||(28867992-28868074)
chr6 (272-354)||(24554084-24554166)
chr6 (272-387)||(33494506-33494622)
chr6 (305-387)||(3713342-3713425)
chr6 (272-354)||(6054370-6054452)
chr6 (272-354)||(7915817-7915900)
chr6 (297-387)||(11721897-11721988)
chr6 (315-392)||(12329940-12330018)
chr6 (300-389)||(12330178-12330268)
chr6 (272-349)||(5572655-5572732)
chr6 (305-354)||(17147695-17147744)
chr6 (272-387)||(4868578-4868694)
[»] chr8 (27 HSPs)
chr8 (271-389)||(17469784-17469903)
chr8 (272-390)||(17477032-17477151)
chr8 (272-389)||(19256585-19256703)
chr8 (272-387)||(39743496-39743612)
chr8 (276-386)||(4828264-4828375)
chr8 (271-389)||(19256819-19256938)
chr8 (272-389)||(24075305-24075423)
chr8 (271-354)||(7267500-7267583)
chr8 (272-327)||(12547066-12547121)
chr8 (277-386)||(26800514-26800624)
chr8 (272-354)||(34843084-34843166)
chr8 (272-387)||(12317013-12317129)
chr8 (272-339)||(34842645-34842712)
chr8 (273-348)||(39984782-39984857)
chr8 (270-387)||(42846606-42846725)
chr8 (272-387)||(5590369-5590485)
chr8 (272-344)||(16050228-16050300)
chr8 (276-354)||(4828039-4828117)
chr8 (272-330)||(7669386-7669444)
chr8 (272-369)||(20702763-20702861)
chr8 (271-387)||(11232430-11232547)
chr8 (305-370)||(18004115-18004180)
chr8 (315-387)||(18939298-18939371)
chr8 (315-387)||(38476287-38476360)
chr8 (315-364)||(42049712-42049761)
chr8 (305-349)||(20301501-20301545)
chr8 (305-349)||(21088133-21088177)
[»] chr7 (19 HSPs)
chr7 (272-347)||(4267821-4267896)
chr7 (273-369)||(26028981-26029077)
chr7 (272-389)||(34027360-34027478)
chr7 (270-389)||(36206062-36206182)
chr7 (272-339)||(2544265-2544332)
chr7 (272-354)||(4268021-4268103)
chr7 (272-338)||(34027594-34027660)
chr7 (274-339)||(31257081-31257146)
chr7 (305-389)||(40746265-40746350)
chr7 (272-339)||(2544497-2544564)
chr7 (272-339)||(6634822-6634889)
chr7 (272-335)||(31257321-31257384)
chr7 (276-354)||(10882040-10882118)
chr7 (272-354)||(26562108-26562190)
chr7 (272-342)||(2404221-2404291)
chr7 (272-354)||(6001470-6001552)
chr7 (272-330)||(17202146-17202204)
chr7 (272-370)||(40746465-40746563)
chr7 (300-369)||(42985143-42985212)
[»] chr3 (26 HSPs)
chr3 (272-370)||(23708243-23708341)
chr3 (272-370)||(23726699-23726797)
chr3 (272-370)||(23745155-23745253)
chr3 (272-387)||(8018935-8019051)
chr3 (272-389)||(11589752-11589870)
chr3 (272-354)||(20327884-20327966)
chr3 (272-387)||(1723077-1723192)
chr3 (272-364)||(23691217-23691309)
chr3 (272-364)||(23708017-23708109)
chr3 (272-364)||(23726473-23726565)
chr3 (272-364)||(23744929-23745021)
chr3 (272-364)||(24063454-24063546)
chr3 (272-370)||(6487352-6487450)
chr3 (272-338)||(9273162-9273228)
chr3 (305-370)||(24063680-24063745)
chr3 (272-354)||(27670427-27670509)
chr3 (272-357)||(17638375-17638459)
chr3 (305-370)||(23691443-23691508)
chr3 (272-387)||(22729067-22729183)
chr3 (332-393)||(11590032-11590094)
chr3 (315-387)||(4155334-4155407)
chr3 (305-370)||(20303083-20303148)
chr3 (305-354)||(20327649-20327698)
chr3 (272-357)||(54368483-54368568)
chr3 (274-339)||(54368691-54368756)
chr3 (271-339)||(38791500-38791568)
[»] chr1 (14 HSPs)
chr1 (272-389)||(3169733-3169851)
chr1 (272-389)||(51588959-51589077)
chr1 (272-389)||(51589193-51589311)
chr1 (272-354)||(12244997-12245079)
chr1 (272-354)||(28408077-28408159)
chr1 (273-389)||(25137302-25137419)
chr1 (297-389)||(51589798-51589891)
chr1 (272-387)||(4112541-4112657)
chr1 (305-387)||(26865359-26865442)
chr1 (272-354)||(3169967-3170050)
chr1 (305-387)||(17452680-17452763)
chr1 (305-363)||(17402714-17402772)
chr1 (271-339)||(20208576-20208644)
chr1 (272-387)||(35772231-35772347)
[»] chr5 (22 HSPs)
chr5 (297-348)||(13296665-13296716)
chr5 (272-339)||(29909537-29909604)
chr5 (272-389)||(19522288-19522405)
chr5 (272-389)||(27132992-27133110)
chr5 (272-369)||(13296859-13296956)
chr5 (272-354)||(29909756-29909839)
chr5 (272-354)||(8098285-8098366)
chr5 (272-354)||(21209956-21210038)
chr5 (272-389)||(24487644-24487762)
chr5 (272-387)||(24346502-24346618)
chr5 (315-370)||(170570-170625)
chr5 (272-338)||(2063784-2063850)
chr5 (272-338)||(4481614-4481680)
chr5 (272-354)||(42295546-42295628)
chr5 (305-354)||(6413461-6413510)
chr5 (271-387)||(9368561-9368678)
chr5 (305-354)||(24531599-24531648)
chr5 (305-370)||(38731622-38731687)
chr5 (274-389)||(8287771-8287886)
chr5 (272-387)||(18333466-18333582)
chr5 (272-387)||(41666758-41666874)
chr5 (272-387)||(41666994-41667110)
[»] scaffold0005 (1 HSPs)
scaffold0005 (270-389)||(56424-56544)
[»] scaffold1034 (1 HSPs)
scaffold1034 (268-330)||(3199-3261)
[»] scaffold0334 (1 HSPs)
scaffold0334 (272-354)||(4464-4546)
[»] scaffold0047 (1 HSPs)
scaffold0047 (300-383)||(12642-12726)
[»] scaffold0481 (1 HSPs)
scaffold0481 (272-354)||(3506-3588)
[»] scaffold0766 (1 HSPs)
scaffold0766 (305-354)||(6274-6323)
[»] scaffold0519 (1 HSPs)
scaffold0519 (271-387)||(1882-1999)
[»] scaffold0692 (1 HSPs)
scaffold0692 (298-338)||(5595-5635)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 31222214 - 31222716
Alignment:
Q  1 ttacaatattttaagttgttaacaatggtctataatcgaagttatgatgagaacaatgcatgcacatgtaccaaaagaggtatttgtcctaata--agaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||     
T  31222214 ttacaatattttaagttgttaacaatggtctataatcgaagttatgataagaacaatgcatgcacatgtaccaaaagaggtatttgtcctaatataagac 31222313  T
Q  99 gtaataagaacaacccacgtcacacccgcgataagcctataattcgatatcaacatcatctttctatataagcattatnnnnnnnnnntaaagtgcgtga 198  Q
    ||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||           |||||||||||    
T  31222314 gtaataagaacaatcaacgtcaaacccgcgataagcctataattcgatatcaacatcatctttctatgtaagcattataacaaaaaaagaaagtgcgtga 31222413  T
Q  199 aaaggcaacaataaagcatgtcacatgtacgagcgttttgggtggggttttgataagaggggttatacccatctgttaagagtcctacatcggtaagaag 298  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| || ||    
T  31222414 aaaggcaacaataaagcatgtcacatgtacgaccgttttgggtggggttttgataagagggtttatacccatctgctaagagttctacatcggttaggag 31222513  T
Q  299 tt-ggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagga-caaccacaatttctaatactatcct 396  Q
    || |  |||| ||||||||||||||||| |||| ||||||||||| || |||||||| |  | |||| |||||| ||||||| |||||||||||||||||    
T  31222514 ttcgacttgataatttatttataagtggaggcaatcctcaccccataaaccgattttgtagggttgtgttaggaccaaccacgatttctaatactatcct 31222613  T
Q  397 cgcacaacaataagtatgtcg-tttgtatcaaa----ataattatcgaattcacac----tgcgatattgtttgagccattcaaattatgcaatgttcta 487  Q
    |||||| |||||||||||||| |||||||||||    |||||||||||||||||||    |||||||| |||||||||||||||||||||||||||||||    
T  31222614 cgcacagcaataagtatgtcgttttgtatcaaaatatataattatcgaattcacactgattgcgatatagtttgagccattcaaattatgcaatgttcta 31222713  T
Q  488 aat 490  Q
    |||    
T  31222714 aat 31222716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31183652 - 31183699
Alignment:
Q  1 ttacaatattttaagttgttaacaatggtctataatcgaagttatgat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31183652 ttacaatattttaagttgttaacaatggtctataatcgaagttatgat 31183699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 37770061 - 37769978
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||| || ||||| || |||||| ||||    
T  37770061 ctgttaagagtcccacatcggttaggagttggtttgacaatttgtttataagtgggggcaatcttcacctcataagccggtttt 37769978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 2324207 - 2324289
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  2324207 tgttaagagtcccacatcggttaggagttggtctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 2324289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 2324441 - 2324523
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| |||||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  2324441 tgttaagagtcccacatcggttagaagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 2324523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 29718295 - 29718411
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagga 371  Q
    |||||||||||| |||||||| || |||||| |||||||||| |||||||||| ||||| |||||||| || |||||| |||| || | |||| |||||     
T  29718295 tgttaagagtcccacatcggttaggagttggcttgacaatttgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 29718394  T
Q  372 c-aaccacaatttctaa 387  Q
    | |||||| ||||||||    
T  29718395 ctaaccacgatttctaa 29718411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 32884074 - 32884156
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  32884074 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 32884156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 393
Target Start/End: Original strand, 13486300 - 13486423
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagt-gggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||||||||||||| ||||||| |||||||| || || | |||||| || | |||| |||||    
T  13486300 tgttaagagtcccacatcggttaggagttggcctgacaatttatttataagtggggggcaatcctcacctcacaaactgattttgtggggttgtgttagg 13486399  T
Q  371 ac-aaccacaatttctaatactat 393  Q
     | |||||| ||||||||| ||||    
T  13486400 cctaaccacgatttctaattctat 13486423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 5509280 - 5509362
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| ||||| || || ||||||   |||||||| |||||||||||||||| ||||||||||| |||||| ||||    
T  5509280 tgttaagagtcccacatcagttaggagttggcccgacaatttgtttataagtgggggcaatcctcaccccacaagccggtttt 5509362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 36316168 - 36316102
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| ||||| || |||||||||  ||||||||| |||||||||||||||| |||||||    
T  36316168 tgttaagagtcccacatcagttagaagttggcctgacaatttgtttataagtgggggcaatcctcac 36316102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31202674 - 31202710
Alignment:
Q  1 ttacaatattttaagttgttaacaatggtctataatc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  31202674 ttacaatattttaagttgttaacaatggtctataatc 31202710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 1926558 - 1926491
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||| |||| ||| |  |||||||| ||||||||||||||||||||||| | ||||||||    
T  1926558 tgttaagagtcccacattggttaagagttggttagacaatttatttataagtgggggtaatcctcacc 1926491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 8424855 - 8424922
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||| ||||| ||||| || || ||||||| |||||||||||||||||||||||||| || |||||    
T  8424855 tgttaaaagtcccacatcagttaggagttggtctgacaatttatttataagtgggggcaatcatcacc 8424922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 28407911 - 28407828
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||||||||| |||||||| || | ||||  | ||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  28407911 ctgttaagagtcccacatcggttaggaattggcctaacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 28407828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 15124665 - 15124583
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||  ||||  |||| ||||||| | |||||||||||||||| ||| |||| || |||||||||||    
T  15124665 tgttaagagtcccacatcggatagaacatggtctgacaatatgtttataagtgggggcaatccccacctcataagccgatttt 15124583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 19191727 - 19191609
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    ||||||||||||  ||||||| || ||||||  ||||| ||| ||||||||||||| || |||||||| || |||||| |||| || | |||| |||||     
T  19191727 tgttaagagtcccccatcggttaggagttggcctgacagtttgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtgttaggc 19191628  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  19191627 ccaaccacgatttctaata 19191609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 27036529 - 27036471
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggca 330  Q
    |||||||||||| |||||||| || ||||||  ||||||||| ||||||||||||||||    
T  27036529 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggca 27036471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 5509048 - 5509113
Alignment:
Q  274 ttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||  |||||||| || ||||||| ||||||||| |||||||||||||| | ||||||||    
T  5509048 ttaagagtcacacatcggttaggagttggtctgacaatttgtttataagtgggggtaatcctcacc 5509113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 21591748 - 21591865
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagt-gggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| |||||| | || ||||||| ||||||||| ||||||||| ||||||| || ||||| || ||| || ||||||| | |||| |||||    
T  21591748 tgttaagagtcccacatcgattaggagttggtctgacaatttgtttataagtggggggcaatcttcacctcataagtcggttttatggggttgtgttagg 21591847  T
Q  371 -acaaccacaatttctaa 387  Q
      ||||||| ||||||||    
T  21591848 cccaaccacgatttctaa 21591865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 16419469 - 16419585
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||| ||||||| | |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  16419469 tgttaagagtcccacatcggataggacatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 16419568  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  16419569 ccaaccacgatttctaa 16419585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 27897722 - 27897667
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggg 327  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||    
T  27897722 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggg 27897667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 17854809 - 17854691
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || |||| |  ||||||| | |||||||||||||||| || ||| | || ||| || |||| || |||||| |||||     
T  17854809 tgttaagagtcccacatcggttaggagttagcctgacaatctgtttataagtgggggcaatcatcatctcacaagtcggttttgtgggattgtgttaggc 17854710  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  17854709 ccaaccacgatttctaata 17854691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 17855046 - 17854964
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||  |||||||| || |||||   ||||||||| |||||||||| ||||| |||||||| || |||||| ||||    
T  17855046 tgttaagagtctcacatcggttaggagttgacctgacaatttgtttataagtgagggcaatcctcacctcacaagccggtttt 17854964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 14927293 - 14927342
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||| | |||||||||||||||| |||||||| || |||||||||||    
T  14927293 tgacaatatgtttataagtgggggcaatcctcacctcataagccgatttt 14927342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 5711556 - 5711440
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| ||||||| ||| |  |||  ||||||| | |||||||||||||||| ||||||||  | |||||| |||| || | |||| |||||     
T  5711556 tgttaagagtcccacatcggaaaggaaatggcctgacaatgtgtttataagtgggggcaatcctcacctaacaagccggttttgtggggttgtgttaggc 5711457  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  5711456 ccaaccacgatttctaa 5711440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 17525427 - 17525363
Alignment:
Q  300 tggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||| ||||||| | |||||||||||||||| |||||||| || |||||| |||| || ||||||    
T  17525427 tggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtgggattgt 17525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 53828642 - 53828524
Alignment:
Q  270 tctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||| | |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || ||||||||||| || | |||| ||||    
T  53828642 tctgttaagagttccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcataagccgattttgtggggttgtgttag 53828543  T
Q  370 g-acaaccacaatttctaa 387  Q
    |  ||||||||||||||||    
T  53828542 gcccaaccacaatttctaa 53828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 390
Target Start/End: Original strand, 9685599 - 9685718
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    ||||||||||||  ||||||| || ||||||| | ||||||| |||||||||||||||| |||||||| || |||||| ||||||| | |||| |||||     
T  9685599 tgttaagagtcccgcatcggttaggagttggtctaacaatttgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttaggc 9685698  T
Q  371 acaaccacaatttctaatac 390  Q
     ||||||| |||||||||||    
T  9685699 ccaaccacgatttctaatac 9685718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 20821940 - 20822058
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| | |||||| || |||||| |||| || |||||| |||||     
T  20821940 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaattctcacctcacaagccggttttgtgggattgtgttaggc 20822039  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  20822040 ccaaccacgatttctaata 20822058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 21498762 - 21498880
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  21498762 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 21498861  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  21498862 ccaaccacgatttctaata 21498880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 53828406 - 53828290
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || || |||||||| || | |||| |||||     
T  53828406 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcataaaccgattttgtggggttgtgttaggc 53828307  T
Q  371 acaaccacaatttctaa 387  Q
     ||| ||||||||||||    
T  53828306 ccaatcacaatttctaa 53828290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 5846113 - 5846195
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||  |||||||| || ||||||| ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  5846113 tgttaagagtctcacatcggttaggagttggtctgacaatttgtttataagtgggggcaatcctcacctcataagccggtttt 5846195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 5846346 - 5846428
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  5846346 tgttaagagtcccacatcggttaggagttggcatgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 5846428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 9685365 - 9685483
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    ||||||||||||||||||||| || ||||||  | ||||||| ||||||||||||| || |||||||| || ||| || |||| |||| |||| |||||     
T  9685365 tgttaagagtcctacatcggttaggagttggcctaacaatttgtttataagtggggccaatcctcacctcacaagtcggttttgtgaggttgtgttaggc 9685464  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  9685465 ccaaccacgatttctaata 9685483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 21498321 - 21498403
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  21498321 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 21498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 12869146 - 12869064
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||||||||| || || ||||||  ||||||||| |||||||||||||||| || ||||| || |||||| ||||    
T  12869146 tgttaagagtcctacatcagttagcagttggcctgacaatttgtttataagtgggggcaatcatcacctcacaagccggtttt 12869064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 22863440 - 22863557
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||  |||||||  ||||| |||  ||||||| | |||||||||||||||| ||||||||||| |||||| |||| || | |||| |||||    
T  22863440 ctgttaagagtctcacatcggacagaagatggcctgacaatgtgtttataagtgggggcaatcctcaccccacaagccggttttgtggggttgtgttagg 22863539  T
Q  371 -acaaccacaatttctaa 387  Q
      ||||||| ||||||||    
T  22863540 cccaaccacgatttctaa 22863557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 54055149 - 54055084
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctca 337  Q
    |||||||||||| |||||||| |||||||||  | ||||||| |||||||||||||||| ||||||    
T  54055149 tgttaagagtcccacatcggttagaagttggcctaacaatttgtttataagtgggggcaatcctca 54055084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 389
Target Start/End: Complemental strand, 14783306 - 14783186
Alignment:
Q  270 tctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||||| |||||||| || ||||| | ||||||||| ||||||| || ||||| || ||||| || |||||| |||| || | |||| ||||    
T  14783306 tctgttaagagtcccacatcggttaggagttgatctgacaatttgtttataactgtgggcaatcatcacctcacaagccggttttgtggggttgtgttag 14783207  T
Q  370 g-acaaccacaatttctaata 389  Q
    |  ||||||| ||||||||||    
T  14783206 gcccaaccacgatttctaata 14783186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 53815046 - 53814979
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||| | |||||||| || ||||||  ||||||||| |||||||||||||||| ||||||||    
T  53815046 tgttaagagttccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacc 53814979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 35819245 - 35819147
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||| ||||||||| ||||| || || |||||  |||| |||| |||| |||||    
T  35819245 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttatatgtgggggcaatcctcgcctcacaagccagttttgtgaggttgtgttagg 35819147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 387
Target Start/End: Original strand, 25052814 - 25052935
Alignment:
Q  267 ccatctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtat 366  Q
    |||| |||||||||||| |||||||| || | ||||  ||||||||| |||||||||||||| | ||| |||| || |||||| |||| || | |||| |    
T  25052814 ccatttgttaagagtcccacatcggttaggaattggcctgacaatttgtttataagtgggggtaatccgcacctcacaagccggttttgtggggttgtgt 25052913  T
Q  367 tagg-acaaccacaatttctaa 387  Q
    ||||  ||||||| ||||||||    
T  25052914 taggcccaaccacgatttctaa 25052935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 1518131 - 1518247
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagga 371  Q
    ||||| |||||| |||||||| || |||||   ||||||||| |||||||||||||||| |||||| | || |||||| |||| || | |||| |||||     
T  1518131 tgttatgagtcccacatcggttaggagttgacctgacaatttgtttataagtgggggcaatcctcagctcacaagccggttttgtggggttgtgttaggc 1518230  T
Q  372 c-aaccacaatttctaa 387  Q
    | |||||| ||||||||    
T  1518231 ctaaccacgatttctaa 1518247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 22231190 - 22231074
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    ||||||||||||||||||||  || |  |||  ||||||| | ||||||||||||| || |||||||| || |||||| |||| || | ||||||||||     
T  22231190 tgttaagagtcctacatcggataggatatggcctgacaatgtgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtattaggt 22231091  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  22231090 ccaaccacgatttctaa 22231074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 980167 - 980100
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||| |||||||| || |||||   ||| ||||| |||||||||||||||| ||||||||    
T  980167 tgttaagagtcccacatcggttaggagttgacctgagaatttgtttataagtgggggcaatcctcacc 980100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 17111768 - 17111851
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    ||||||| | |||||||||||||  | || ||||  ||||||||||||||||||| |||| |||||  ||||||||||||||||    
T  17111768 tgacaatgtgtttataagtggggttattcatcacttcaaaagccgattttatgaggttgtgttaggtccaaccacaatttctaa 17111851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 35788659 - 35788742
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    ||||||| | |||||||||||||||| |||||||| || |||||| ||||||| | |||| |||||  ||||||| ||||||||    
T  35788659 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttatggggttgtgttaggcccaaccacgatttctaa 35788742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 394
Target Start/End: Complemental strand, 54054922 - 54054799
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||| | || |||||   | ||||||| |||||||||||||||| | |||||| || |||||| |||| || | |||| |||||     
T  54054922 tgttaagagtcccacatcgattaggagttgacctaacaatttgtttataagtgggggcaattctcacctcataagccgtttttgtggggttgtgttaggc 54054823  T
Q  371 acaaccacaatttctaatactatc 394  Q
     ||||||| |||||||||| ||||    
T  54054822 ccaaccacgatttctaataatatc 54054799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 11104013 - 11103947
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| |||||||| || ||||||  ||||||||||||||||| | ||| || |||||||    
T  11104013 tgttaagagtcccacatcggttaggagttggcctgacaatttatttataaatagggacaatcctcac 11103947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 53814758 - 53814673
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaata 389  Q
    ||||||||| |||||||||||||  | |||||||| || |||||| |||| || |||||| |||||  ||||||| ||||||||||    
T  53814758 tgacaatttgtttataagtggggataatcctcacctcacaagccggttttgtgggattgtgttaggcccaaccacgatttctaata 53814673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 400654 - 400566
Alignment:
Q  300 tggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtatt-aggacaaccacaatttctaa 387  Q
    |||| ||||||| | |||||||||||||| | |||||||| || |||||| |||| |||| |||| || ||  ||||||||||||||||    
T  400654 tggtctgacaatgtgtttataagtgggggaaatcctcacctcacaagccggttttgtgaggttgtgttaagctcaaccacaatttctaa 400566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 12869348 - 12869264
Alignment:
Q  304 ttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    |||||||||||||||||||||||| || |||||||| || ||| || |||| || | |||| |||||  ||||||| ||||||||    
T  12869348 ttgacaatttatttataagtggggacaatcctcacctcataagacggttttgtggggttgtgttaggcccaaccacgatttctaa 12869264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 28246171 - 28246107
Alignment:
Q  303 tttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtatt 367  Q
    ||||||||| | |||||||||||||||| |||||||| || |||||| |||| || | |||||||    
T  28246171 tttgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtatt 28246107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 35788861 - 35788977
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  ||||  |||  ||||||| | |||||||||||||||| |||||| | || |||||| |||| || | |||| |||||     
T  35788861 tgttaagagtcccacatcggatagaacatggcctgacaatgtgtttataagtgggggcaatcctcatctcacaagccggttttgtggggttgtgttaggc 35788960  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  35788961 ccaaccacgatttctaa 35788977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 40717558 - 40717442
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||| | ||||| ||  | ||||||  ||| ||||| |||||||||||||||| |||||||| |||||| || |||| || | |||| |||||     
T  40717558 tgttaagagttccacatcagttgggagttggcctgataatttgtttataagtgggggcaatcctcacctcaaaagtcggttttgtggggttgtgttaggc 40717459  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  40717458 ccaaccacgatttctaa 40717442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 50543419 - 50543331
Alignment:
Q  300 tggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    |||| ||||||| | | |||||||||||||| ||||||||||| |||||| |||| || | |||| |||||  ||||||| ||||||||    
T  50543419 tggtctgacaatgtgtgtataagtgggggcaatcctcaccccacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 50543331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 272 - 391
Target Start/End: Original strand, 27656425 - 27656545
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||| | |||||||| || |||||| |||| || | |||| |||||     
T  27656425 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggaaatcctcacctcacaagccggttttgtggggttgtgttaggc 27656524  T
Q  371 acaaccacaatttctaatact 391  Q
     ||||||||||||||||||||    
T  27656525 ccaaccacaatttctaatact 27656545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 21690689 - 21690807
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || | ||||  ||||||||| |||||||||||||||| |||||||| || ||||||||||| || | |||| |||||     
T  21690689 tgttaagagtcccacatcggttaggatttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccgattttgtggggttgtgttaggc 21690788  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  21690789 tcaaccacgatttctaata 21690807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 389
Target Start/End: Original strand, 27653183 - 27653302
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||| | |||||||| || ||| || |||| || |||||| |||||    
T  27653183 ctgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggaaatcctcacctcacaagtcggttttgtgggattgtgttagg 27653282  T
Q  371 -acaaccacaatttctaata 389  Q
      ||||||| ||||||||||    
T  27653283 cccaaccacgatttctaata 27653302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 27772913 - 27773031
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtatt-agg 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||| | |||| || |||||| || ||     
T  27772913 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagctggttttgtgggattgtgttaagc 27773012  T
Q  371 acaaccacaatttctaata 389  Q
     |||||| |||||||||||    
T  27773013 ccaaccataatttctaata 27773031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 19712919 - 19713035
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||| | |||||||| || ||||||  ||||||||| |||||||||||||||| | |||||| || |||||| |||| || |||||| |||||     
T  19712919 tgttaagagttccacatcggttaggagttggcctgacaatttgtttataagtgggggcaattctcacctcacaagccggttttgtgggattgtgttaggc 19713018  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  19713019 ccaaccaccatttctaa 19713035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 27772680 - 27772763
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||||| ||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  27772680 ctgttaagattcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 27772763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 8026356 - 8026474
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| || ||||| |  ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  8026356 tgttaagagtcccacgtcggttatgagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 8026455  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  8026456 ccaaccacgatttctaata 8026474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 15600903 - 15600969
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| |||||||| || ||||||| ||| ||||| |||||||||||||||| |||||||    
T  15600903 tgttaagagtcccacatcggttaggagttggtctgataatttgtttataagtgggggcaatcctcac 15600969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 28868074 - 28867992
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| |  |||||   |||||||||||||||||||||||||| |||||||| || |||||| ||||    
T  28868074 tgttaagagtcccacatcggttacgagttgacctgacaatttatttataagtgggggcaatcctcacctcacaagccggtttt 28867992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 24554084 - 24554166
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||  || || |||| ||||||| |||||||||||||||||| || ||||| || |||||| ||||    
T  24554084 tgttaagagtcccacatcggataggagatggtctgacaatatatttataagtgggggcaatcttcacctcacaagccggtttt 24554166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 33494506 - 33494622
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || || ||| |||| ||| | |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  33494506 tgttaagagtcccacatcggataggagatggcttgaaaatatgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 33494605  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  33494606 ccaaccaccatttctaa 33494622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 3713342 - 3713425
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    ||||||| | ||||||||| | |||| |||||||  |||||||||||||| | || |||| ||||| |||||||||||||||||    
T  3713342 tgacaatgtgtttataagttgaggcaatcctcacatcaaaagccgattttgtaaggttgtgttaggcacaaccacaatttctaa 3713425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 6054370 - 6054452
Alignment:
Q  272 tgttaagagtcctacatcgg-taagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| ||||||| ||||| | |||| ||||||  |||||||||||||||||| |||||||| || || ||||||||    
T  6054370 tgttaagagtccaacatcggataaga-gatggtctgacaaggtatttataagtgggggcaatcctcacctcacaaaccgatttt 6054452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 7915817 - 7915900
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagt-gggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||| ||  |||||||||  ||||||| | ||||||||| ||||||| |||||||| || |||||||||||    
T  7915817 tgttaagagtccaacattggatagaagttggcctgacaatgtgtttataagtggggggcaatcctcacctcacaagccgatttt 7915900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 11721897 - 11721988
Alignment:
Q  297 agttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    ||||||| | ||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||  ||||||| ||||||||    
T  11721897 agttggtctaacaatttgtttataagtgggggcaatcctcacctcataagccggttttgtggggttgtgttaggcccaaccacgatttctaa 11721988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 12330018 - 12329940
Alignment:
Q  315 tttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaatacta 392  Q
    |||||||||||||||| |||||||| || |||| |||||| |||| |||| |||||  ||||||| |||| ||||||||    
T  12330018 tttataagtgggggcaatcctcacctcacaagctgattttgtgaggttgtgttaggcccaaccacgatttgtaatacta 12329940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 12330268 - 12330178
Alignment:
Q  300 tggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaata 389  Q
    |||| ||||||| | ||||||||||||||||  ||||||| || |||||| |||| |||| |||| |||||  ||||||| ||||||||||    
T  12330268 tggtctgacaatgtgtttataagtgggggcaaccctcacctcacaagccggttttgtgaggttgtgttaggcccaaccacgatttctaata 12330178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 5572732 - 5572655
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccg 349  Q
    |||||||| ||| |||||| | || ||||||  ||||||||| |||||||||||||||  |||||||| || ||||||    
T  5572732 tgttaagaatcccacatcgtttaggagttggcatgacaatttgtttataagtgggggccatcctcacctcacaagccg 5572655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 17147744 - 17147695
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||| |||||||||||||||||| |||||||| || |||||| ||||    
T  17147744 tgacaatgtatttataagtgggggcaatcctcacctcacaagccggtttt 17147695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 4868694 - 4868578
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||  ||||||| | |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  4868694 tgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 4868595  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  4868594 ccaaccacgatttctaa 4868578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 389
Target Start/End: Original strand, 17469784 - 17469903
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||    
T  17469784 ctgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttagg 17469883  T
Q  371 -acaaccacaatttctaata 389  Q
      ||||||| ||||||||||    
T  17469884 ctcaaccacgatttctaata 17469903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 390
Target Start/End: Original strand, 17477032 - 17477151
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  17477032 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 17477131  T
Q  371 acaaccacaatttctaatac 390  Q
     ||||||| |||||||||||    
T  17477132 tcaaccacgatttctaatac 17477151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 19256703 - 19256585
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  19256703 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 19256604  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  19256603 ccaaccacgatttctaata 19256585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 39743496 - 39743612
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| ||||||||| |||||| |||||||| || ||||||||||| || | |||| |||||     
T  39743496 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagttggggcaatcctcacctcacaagccgattttgtggggttgtgttaggc 39743595  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  39743596 ccaaccacgatttctaa 39743612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 4828264 - 4828375
Alignment:
Q  276 aagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaa 374  Q
    |||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||  |||    
T  4828264 aagagtcccacatcggttaggagttggcatgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaa 4828363  T
Q  375 ccacaatttcta 386  Q
    ||||||||||||    
T  4828364 ccacaatttcta 4828375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 389
Target Start/End: Complemental strand, 19256938 - 19256819
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||| | |||| || | |||| |||||    
T  19256938 ctgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagcaggttttgtggggttgtgttagg 19256839  T
Q  371 -acaaccacaatttctaata 389  Q
      ||||||| ||||||||||    
T  19256838 cccaaccacgatttctaata 19256819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 24075423 - 24075305
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||  ||||| ||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  24075423 tgttaagagtcccacatcggttaggagttggcctgacactttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 24075324  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  24075323 ccaaccacgatttctaata 24075305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 7267583 - 7267500
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||||||||  |||||||| || |||||| |||||||||| |||||||||||||||| || ||||| || |||||| ||||    
T  7267583 ctgttaagagtcacacatcggttaggagttggcttgacaatttgtttataagtgggggcaatcatcacctcacaagccggtttt 7267500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 12547066 - 12547121
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggg 327  Q
    |||||||||||| |||||||| || ||||||| |||||||||||||||||||||||    
T  12547066 tgttaagagtcccacatcggttaggagttggtctgacaatttatttataagtgggg 12547121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 26800624 - 26800514
Alignment:
Q  277 agagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaac 375  Q
    ||||||| |||||||| |||||||||  ||| ||||| | |||||||||||||| |||||||| || |||||| |||| || | |||| |||||  ||||    
T  26800624 agagtcccacatcggttagaagttggcctgataatttgtctataagtgggggcaatcctcaccacacaagccggttttgtggggttgtgttaggcccaac 26800525  T
Q  376 cacaatttcta 386  Q
    |||||||||||    
T  26800524 cacaatttcta 26800514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 34843084 - 34843166
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||| | ||||||| |||||||||||| ||| |||||||| || |||||| ||||    
T  34843084 tgttaagagtcccacatcggttaggagttggtctaacaatttgtttataagtgggagcaatcctcacctcacaagccggtttt 34843166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 12317013 - 12317129
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||| ||||||| | |||||||||||||||| |||||||| || |||| |||||| || |||||| |||||     
T  12317013 tgttaagagtcccacatcggacaggacatggtctgacaatgtgtttataagtgggggcaatcctcacctcataagctgattttgtgggattgtgttaggc 12317112  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  12317113 ccaaccacgatttctaa 12317129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 34842645 - 34842712
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||| ||||| || || ||||||  ||||||||| |||||||||||||||| ||||||||    
T  34842645 tgttaagagtcccacatcagttaggagttggcctgacaatttgtttataagtgggggcaatcctcacc 34842712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 39984782 - 39984857
Alignment:
Q  273 gttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagcc 348  Q
    ||||||||||  |||||| | || ||||||| ||||||||| |||||||||||||||| |||||||| || |||||    
T  39984782 gttaagagtctcacatcgattaggagttggtctgacaatttgtttataagtgggggcaatcctcacctcacaagcc 39984857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 42846725 - 42846606
Alignment:
Q  270 tctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgg-gggcagtcctcaccccaaaagccgattttatgagattgtatta 368  Q
    |||||||||||||  |||||||| || ||||||  ||||||||| ||||||||||| ||||| |||||||| || |||||| |||| || | |||| |||    
T  42846725 tctgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtggagggcaatcctcacctcacaagccggttttgtggggttgtgtta 42846626  T
Q  369 gg-acaaccacaatttctaa 387  Q
    ||  ||||||| ||||||||    
T  42846625 ggcccaaccacgatttctaa 42846606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 5590485 - 5590369
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||| ||||||| |||||||  || || |||| ||||||| | |||| ||||||||||| |||||||  || |||||| |||| |||| |||| |||||     
T  5590485 tgttcagagtcccacatcggataggagatggtctgacaatgtgtttacaagtgggggcaatcctcacttcacaagccggttttgtgaggttgtgttaggc 5590386  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||||||||||||    
T  5590385 ccaaccacaatttctaa 5590369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 16050228 - 16050300
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaa 344  Q
    |||||||||||  |||||||| || ||||||  |||||||||||||||||||| || || |||||||| ||||    
T  16050228 tgttaagagtctcacatcggttaggagttggcctgacaatttatttataagtgaggacaatcctcacctcaaa 16050300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 4828039 - 4828117
Alignment:
Q  276 aagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||| |||||||| || |||||   ||||||||| ||||||||||||| || |||||||| || |||||| ||||    
T  4828039 aagagtcccacatcggttaggagttgacatgacaatttgtttataagtggggacaatcctcacctcacaagccggtttt 4828117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 7669386 - 7669444
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggca 330  Q
    ||||||||| ||||||||||  ||||| |||||||||||  | ||||||||||||||||    
T  7669386 tgttaagagccctacatcggatagaagatggtttgacaacgtgtttataagtgggggca 7669444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 20702763 - 20702861
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagt-gggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||| |||||||| || ||||||  ||||| ||| ||||||||| ||||||| |||||| | || |||||| |||| |||| |||| ||||    
T  20702763 tgttaagagtcccacatcggttaggagttggcctgacagtttgtttataagtggggggcaatcctcatctcataagccggttttgtgaggttgtgttag 20702861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 387
Target Start/End: Complemental strand, 11232547 - 11232430
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||| |||||||  || |  |||| ||||||| | |||||||||||||||| ||||||||  | |||||| |||| || | |||| |||||    
T  11232547 ctgttaagagtcccacatcggacaggacatggtctgacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgttagg 11232448  T
Q  371 -acaaccacaatttctaa 387  Q
      ||||||| ||||||||    
T  11232447 cccaaccaccatttctaa 11232430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 18004180 - 18004115
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||| | |||||||||||||||| ||||||||||| ||| || |||| |||| |||| |||||    
T  18004180 tgacaatatgtttataagtgggggcaatcctcaccccataagtcggttttgtgaggttgtgttagg 18004115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 18939371 - 18939298
Alignment:
Q  315 tttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    |||||||||||||||| |||||||| || |||| |||||| |||| |||| |||||  ||||||| ||||||||    
T  18939371 tttataagtgggggcaatcctcacctcacaagctgattttgtgaggttgtgttaggcccaaccaccatttctaa 18939298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 38476287 - 38476360
Alignment:
Q  315 tttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattaggac-aaccacaatttctaa 387  Q
    |||||||||||||| | |||||||| || ||||||||||| || | |||| ||||||| |||||||| ||||||    
T  38476287 tttataagtgggggaaatcctcacctcacaagccgattttgtggggttgtgttaggactaaccacaaattctaa 38476360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 42049761 - 42049712
Alignment:
Q  315 tttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||| ||||    
T  42049761 tttataagtgggggcaatcctcaccccacaagccggttttgtgaggttgt 42049712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 20301501 - 20301545
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccg 349  Q
    ||||||| | |||||||||||||||| ||||||||||| ||||||    
T  20301501 tgacaatgtgtttataagtgggggcaatcctcaccccacaagccg 20301545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 21088133 - 21088177
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccg 349  Q
    ||||||| | |||||||||||||||| ||||||||||| ||||||    
T  21088133 tgacaatgtgtttataagtgggggcaatcctcaccccacaagccg 21088177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 4267821 - 4267896
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagc 347  Q
    |||||||||||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  4267821 tgttaagagtcccacatcggttaggagttggtctgacaatttgtttataagtgggggcaatcctcacctcaaaagc 4267896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 26029077 - 26028981
Alignment:
Q  273 gttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||||||||||| || ||||||  ||||||||||||| ||| |||| ||| |||||||| || ||||||||||| |||| |||| ||||    
T  26029077 gttaagagtcctacatcggttaggagttggcctgacaatttatttttaaatgggagcaatcctcacctcacaagccgattttgtgaggttgtgttag 26028981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 34027360 - 34027478
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||| ||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  34027360 tgttaagaatcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 34027459  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  34027460 ccaaccacgatttctaata 34027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 389
Target Start/End: Complemental strand, 36206182 - 36206062
Alignment:
Q  270 tctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||| | |||||||| || ||||||  | ||||||| ||||||||||| |||| || ||||| || |||||| ||||||| | |||||||||    
T  36206182 tctgttaagagttccacatcggttaggagttggcctaacaatttgtttataagtggaggcaatcttcacctcacaagccggttttatggggttgtattag 36206083  T
Q  370 g-acaaccacaatttctaata 389  Q
    |  ||||||| ||||||||||    
T  36206082 gctcaaccacgatttctaata 36206062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 2544332 - 2544265
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||| |||||||| || ||||||| ||||||||| |||||||||||||||| || |||||    
T  2544332 tgttaagagtcccacatcggttaggagttggtctgacaatttgtttataagtgggggcaatcttcacc 2544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 4268021 - 4268103
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| ||||| || || ||||||  ||||||||| |||||||||||||||| || ||||| ||||||||| ||||    
T  4268021 tgttaagagtcccacatcagttaggagttggcctgacaatttgtttataagtgggggcaatcatcacctcaaaagccggtttt 4268103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 34027594 - 34027660
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| ||||| || |||||||||  ||||||||| |||||||||||||||| |||||||    
T  34027594 tgttaagagtcccacatcagttagaagttggcctgacaatttgtttataagtgggggcaatcctcac 34027660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 31257146 - 31257081
Alignment:
Q  274 ttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||  |||||||| |||||||||| ||||||||| |||||||||||||||| || |||||    
T  31257146 ttaagagtctcacatcggttagaagttggtctgacaatttgtttataagtgggggcaatcttcacc 31257081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 40746265 - 40746350
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaata 389  Q
    ||||||||| |||||||||| ||||| |||||||| || ||||||||||| || | |||| |||||  ||||||||||||||||||    
T  40746265 tgacaatttgtttataagtgagggcaatcctcacctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaata 40746350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 2544564 - 2544497
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||| || ||||| || ||||||  ||||||||| |||||||||||||||| ||||||||    
T  2544564 tgttaagagtcccacgtcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacc 2544497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 6634822 - 6634889
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||  |||||||| || ||||||  ||||||||| |||||||||||||||| ||||||||    
T  6634822 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacc 6634889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 31257384 - 31257321
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcct 335  Q
    ||||||| |||  |||||||| || ||||||| |||||||||||||||||||||||||| ||||    
T  31257384 tgttaagcgtctcacatcggttaggagttggtctgacaatttatttataagtgggggcaatcct 31257321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 10882118 - 10882040
Alignment:
Q  276 aagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||| |||| | |||| ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  10882118 aagagtcccacattgataaggagttggcatgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 10882040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 26562190 - 26562108
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||  |||||||| || ||||||  ||||||||| |||||||||||||||| || ||||| || |||||| ||||    
T  26562190 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcttcacctcacaagccggtttt 26562108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 2404291 - 2404221
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacccca 342  Q
    |||||||||||| |||||||| || || |||  ||||||| | |||||||||||||||| |||| ||||||    
T  2404291 tgttaagagtcccacatcggttaggagatggactgacaatgtgtttataagtgggggcaatcctaacccca 2404221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 6001552 - 6001470
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||  ||||| ||   ||||||| | |||||||||||||||| |||||||| || || ||||||||    
T  6001552 tgttaagagtcccacatcggatagaagatgacctgacaatatgtttataagtgggggcaatcctcacctcagaaaccgatttt 6001470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 17202146 - 17202204
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggca 330  Q
    |||||||||||| |||||||| |  ||||||  ||||||||| ||||||||||||||||    
T  17202146 tgttaagagtcccacatcggttaagagttggcctgacaatttgtttataagtgggggca 17202204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 370
Target Start/End: Original strand, 40746465 - 40746563
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| |||| ||| || ||||||  ||||||||| |||||||||||||| | ||| |||| || |||||  |||| |||| |||| |||||    
T  40746465 tgttaagagtcccacattggttaggagttggcctgacaatttgtttataagtgggggaaatccacacctcacaagccagttttgtgaggttgtgttagg 40746563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 42985212 - 42985143
Alignment:
Q  300 tggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||| | ||||||||||| |||| |||||||| || ||| ||||||| |||| |||| ||||    
T  42985212 tggtttgacaatgtgtttataagtggaggcaatcctcacctcacaagtcgattttgtgaggttgtgttag 42985143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 23708341 - 23708243
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| ||||| || || |||| || ||||||||| |||||||||||||||| |||||||| || |||||| |||| ||||||||| |||||    
T  23708341 tgttaagagtcccacatcagttaggagttagtctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgagattgtgttagg 23708243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 23726797 - 23726699
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| ||||| || || |||| || ||||||||| |||||||||||||||| |||||||| || |||||| |||| ||||||||| |||||    
T  23726797 tgttaagagtcccacatcagttaggagttagtctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgagattgtgttagg 23726699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 23745253 - 23745155
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| ||||| || || |||| || ||||||||| |||||||||||||||| |||||||| || |||||| |||| ||||||||| |||||    
T  23745253 tgttaagagtcccacatcagttaggagttagtctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgagattgtgttagg 23745155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 8018935 - 8019051
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| |||||||||  ||| ||||| |||||||||||| ||| |||||||| || |||||| |||| || | |||| |||||     
T  8018935 tgttaagagtcccacatcggttagaagttggcctgaaaatttgtttataagtgggtgcaatcctcacctcacaagccggttttgtggggttgtgttaggc 8019034  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||||||||||||    
T  8019035 ccaaccacaatttctaa 8019051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 11589752 - 11589870
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||  |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  11589752 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 11589851  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  11589852 ccaaccacgatttctaata 11589870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 20327966 - 20327884
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  20327966 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 20327884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 1723192 - 1723077
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| ||| |||||  ||||||||| |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  1723192 tgttaagagtcccacatcggttaga-gttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 1723094  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  1723093 ccaaccacgatttctaa 1723077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 23691309 - 23691217
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||||||||||| |||||||| || |||| |  ||||||||| |||||||||||||||| |||||||| || |||||| |||| |||| ||||    
T  23691309 tgttaagagtcccacatcggttaggagttagcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgaggttgt 23691217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 23708109 - 23708017
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||||||||||| |||||||| || |||| |  ||||||||| |||||||||||||||| |||||||| || |||||| |||| |||| ||||    
T  23708109 tgttaagagtcccacatcggttaggagttagcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgaggttgt 23708017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 23726565 - 23726473
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||||||||||| |||||||| || |||| |  ||||||||| |||||||||||||||| |||||||| || |||||| |||| |||| ||||    
T  23726565 tgttaagagtcccacatcggttaggagttagcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgaggttgt 23726473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 23745021 - 23744929
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||||||||||| |||||||| || |||| |  ||||||||| |||||||||||||||| |||||||| || |||||| |||| |||| ||||    
T  23745021 tgttaagagtcccacatcggttaggagttagcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgaggttgt 23744929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 24063546 - 24063454
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgt 364  Q
    |||||||||||| |||||||| || |||| |  ||||||||| |||||||||||||||| |||||||| || |||||| |||| |||| ||||    
T  24063546 tgttaagagtcccacatcggttaggagttagcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgaggttgt 24063454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 6487450 - 6487352
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||| ||||||||||| || | |||||||| || |||||| ||||||| | |||| |||||    
T  6487450 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtggaggtaatcctcacctcacaagccggttttatggggttgttttagg 6487352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 9273162 - 9273228
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| |||||||| || | ||||| ||||||||| |||||||||||||||| |||||||    
T  9273162 tgttaagagtcccacatcggttaggaattggtctgacaatttgtttataagtgggggcaatcctcac 9273228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 24063745 - 24063680
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||| |||||||||||||||| |||||||| || |||||| |||| ||||||||| |||||    
T  24063745 tgacaatttgtttataagtgggggcaatcctcacctcacaagccggttttgtgagattgtgttagg 24063680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 27670509 - 27670427
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || | ||||  |||||| || |||||||||||||||| |||||||| |||| |||| ||||    
T  27670509 tgttaagagtcccacatcggtcaggaattggcctgacaaattgtttataagtgggggcaatcctcacctcaaaggccggtttt 27670427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 17638375 - 17638459
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatg 357  Q
    |||||||||||| |||||||| ||||| |||  ||||||||| ||||||||| |||||| |||||| | || |||||| |||||||    
T  17638375 tgttaagagtcccacatcggttagaagctggcctgacaatttgtttataagt-ggggcaatcctcatctcacaagccggttttatg 17638459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 23691508 - 23691443
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||| |||||||||||||||| |||||||| || ||||||  ||| ||||||||| |||||    
T  23691508 tgacaatttgtttataagtgggggcaatcctcacctcacaagccggatttgtgagattgtgttagg 23691443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 22729067 - 22729183
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||| ||||||| |||||||  || || |||| ||||||| | |||| ||||||||||| |||||||  || |||||| |||| |||| |||| |||||     
T  22729067 tgttcagagtcccacatcggataggagatggtctgacaatgtgtttacaagtgggggcaatcctcacttcacaagccggttttgtgaggttgtgttaggc 22729166  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||||||||||||    
T  22729167 ccaaccacaatttctaa 22729183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 11590032 - 11590094
Alignment:
Q  332 tcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaatactat 393  Q
    |||||||| || |||||| ||||||| ||||||||||||  ||||||||| ||||||||||||    
T  11590032 tcctcacctcacaagccggttttatgggattgtattaggcccaaccacaacttctaatactat 11590094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 4155334 - 4155407
Alignment:
Q  315 tttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    |||||||||||||||| |||||||| ||||||||| |||| || | |||| |||||  ||||||| ||||||||    
T  4155334 tttataagtgggggcaatcctcacctcaaaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 4155407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 20303148 - 20303083
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||| |||||||||||||||||| |||||||| || || ||| |||| || |||||| |||||    
T  20303148 tgacaatgtatttataagtgggggcaatcctcacctcacaaaccggttttgtgggattgtgttagg 20303083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 20327698 - 20327649
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||| |||||||||||||||||| |||||||| || |||||| ||||    
T  20327698 tgacaatgtatttataagtgggggcaatcctcacctcacaagccggtttt 20327649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 54368483 - 54368568
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatg 357  Q
    |||||||||||| ||||| |  ||||| |||  ||| ||| | |||||||||||||||| |||||||| || |||||| |||||||    
T  54368483 tgttaagagtcccacatccgatagaagatggcctgaaaatgtgtttataagtgggggcaatcctcacctcacaagccggttttatg 54368568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 54368691 - 54368756
Alignment:
Q  274 ttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||| |||||||  ||||| |||  ||||||| ||||||||||||| |||| ||||||||    
T  54368691 ttaagagtccaacatcggatagaagatggcctgacaatgtatttataagtggtggcaatcctcacc 54368756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 38791568 - 38791500
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    ||||||||||||| |||||||  || || |||| ||||||| |||||||||||| || || ||||||||    
T  38791568 ctgttaagagtcccacatcggataggagatggtctgacaatgtatttataagtgaggacaatcctcacc 38791500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 3169733 - 3169851
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||| ||||||||| |||||||||||||||| || ||||| || |||||| |||| || | |||| |||||     
T  3169733 tgttaagagtcccacatcggttaggagttggtctgacaatttgtttataagtgggggcaatcttcacctcacaagccggttttgtggggttgtgttaggc 3169832  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  3169833 ccaaccacgatttctaata 3169851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 51588959 - 51589077
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||| || ||||||| ||||||||| |||||||||| ||||| |||||||| || |||||| |||| || | |||| |||||     
T  51588959 tgttaagagtcccacatcggttaggagttggtctgacaatttgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 51589058  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  51589059 ccaaccaccatttctaata 51589077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 51589193 - 51589311
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagga 371  Q
    |||||||||||| |||||||| || ||||||| ||||||||| |||||||||| ||||| |||||||| || |||||| |||| || | |||| |||||     
T  51589193 tgttaagagtcccacatcggttaggagttggtctgacaatttgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 51589292  T
Q  372 c-aaccacaatttctaata 389  Q
    | |||||| ||||||||||    
T  51589293 ctaaccacgatttctaata 51589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 12245079 - 12244997
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||||||||||||||| | || ||||||| || |||||| |||||||||||||||| |||||||| || |||||| ||||    
T  12245079 tgttaagagtcctacatcgattaggagttggtctggcaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 12244997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 28408159 - 28408077
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||| || |||| ||| || |||||| ||||    
T  28408159 tgttaagagtcccacatcggttagaagttggtctgacaatttgtttataagtggggacaatccttacctcacaagccggtttt 28408077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 389
Target Start/End: Complemental strand, 25137419 - 25137302
Alignment:
Q  273 gttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-a 371  Q
    ||||||||||| |||||||| || ||||||  ||||||||| |||||||||  ||||| |||||||| || |||||| |||| || | |||| |||||      
T  25137419 gttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtatgggcaatcctcacctcataagccggttttgtggggttgtgttaggcc 25137320  T
Q  372 caaccacaatttctaata 389  Q
    ||||||||||||||||||    
T  25137319 caaccacaatttctaata 25137302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 51589798 - 51589891
Alignment:
Q  297 agttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaata 389  Q
    ||||||| ||||||||| |||||||||| ||||| |||||||| || ||||||||||| || | |||| |||||  ||||||| ||||||||||    
T  51589798 agttggtctgacaatttgtttataagtgagggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttctaata 51589891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 4112657 - 4112541
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||  ||||||| | ||||||||| |||||| || ||||| || |||||||||||||| |||||| |||||     
T  4112657 tgttaagagtcccacatcggacaggacatggcatgacaatgtgtttataagtaggggcaatcatcacctcacaagccgattttatgggattgtgttaggc 4112558  T
Q  371 acaaccacaatttctaa 387  Q
    |||||||| ||||||||    
T  4112557 acaaccacgatttctaa 4112541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 26865442 - 26865359
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    ||||||| |||||||||||||||||| ||| |||| || |||||| |||| || | ||||||||||  ||||||||||||||||    
T  26865442 tgacaatgtatttataagtgggggcaatccccacctcacaagccggttttgtggggttgtattaggctcaaccacaatttctaa 26865359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 3169967 - 3170050
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaattt-atttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||| |||||||||  |||||||||| ||||| |||| ||| || |||||| ||||    
T  3169967 tgttaagagtcccacatcggttaggagttggtctgacaatttgttttataagtgagggcaatccttacctcacaagccggtttt 3170050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 17452763 - 17452680
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaatttctaa 387  Q
    ||||||| |||||||||||||||||| |||||||| || |||||| |||| || | |||| |||||  ||||||| ||||||||    
T  17452763 tgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 17452680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 17402714 - 17402772
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattg 363  Q
    ||||||||| |||||||||||||||| |||||||| ||||| ||| |||| || |||||    
T  17402714 tgacaatttgtttataagtgggggcaatcctcacctcaaaatccggttttttgggattg 17402772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 20208644 - 20208576
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    ||||||||||||| |||||||  || |  |||| ||||||| | |||||||||||||||| ||||||||    
T  20208644 ctgttaagagtcccacatcggataggacatggtctgacaatgtgtttataagtgggggcaatcctcacc 20208576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 35772231 - 35772347
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || || |||  ||||||| | |||||||||||||||| |||| ||| || |||||| |||| || | |||| |||||     
T  35772231 tgttaagagtcccacatcggataggagatggcctgacaatgtgtttataagtgggggcaatccttacctcagaagccggttttgtggggttgtgttaggc 35772330  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  35772331 ccaaccacgatttctaa 35772347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 13296665 - 13296716
Alignment:
Q  297 agttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagcc 348  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  13296665 agttggtttgacaatttatttataagtgggggcaatcctcacctcacaagcc 13296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 29909604 - 29909537
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcacc 339  Q
    |||||||||||| |||||||| || ||||||  ||||||||||||||||||||| |||| ||||||||    
T  29909604 tgttaagagtccgacatcggttaggagttggcctgacaatttatttataagtggaggcaatcctcacc 29909537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 19522288 - 19522405
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag-g 370  Q
    |||||||||||| |||||||| || ||||||  ||||||||||||||||||| |||||| |  ||||| || ||||||||||| || | |||| ||||      
T  19522288 tgttaagagtcccacatcggttaggagttggactgacaatttatttataagt-ggggcaataatcacctcacaagccgattttgtggggttgtgttagac 19522386  T
Q  371 acaaccacaatttctaata 389  Q
    |||||||| ||||||||||    
T  19522387 acaaccacgatttctaata 19522405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 27133110 - 27132992
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||  |||||||| || ||||||  ||||||||| |||||||||| ||||| |||||||| || |||||| |||| || | |||| |||||     
T  27133110 tgttaagagtctcacatcggttaggagttggcctgacaatttgtttataagtgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 27133011  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  27133010 ccaaccacgatttctaata 27132992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 13296859 - 13296956
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    ||||||||||||  ||||||| || ||||||| ||||||||| ||||||||||||||||  ||||||| || || ||| |||| || |||||| ||||    
T  13296859 tgttaagagtcccgcatcggttaggagttggtctgacaatttgtttataagtgggggcaaccctcacctcacaaaccggttttgtgggattgtgttag 13296956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 29909839 - 29909756
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaa-tttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| ||||| || || |||||||||||||| ||| ||||||||||| |||| |||||||| || |||||| ||||    
T  29909839 tgttaagagtcccacatcagttaggagttggtttgacaattttttttataagtggaggcaatcctcacctcacaagccggtttt 29909756  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 8098285 - 8098366
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||  ||||||||| ||||||||| |||||| |||||||| || |||||| ||||    
T  8098285 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagt-ggggcaatcctcacctcacaagccggtttt 8098366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 21210038 - 21209956
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || ||||||  ||||||||| ||||||||||||| || | |||||| || |||||| ||||    
T  21210038 tgttaagagtcccacatcggttaggagttggcctgacaatttgtttataagtggggacaattctcacctcacaagccggtttt 21209956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 24487762 - 24487644
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtatt-agg 370  Q
    |||||||||||  |||||||| || ||||||| ||| ||| | |||||||||||||| | |||||||| || |||||| |||| |||| |||| || ||     
T  24487762 tgttaagagtctcacatcggttaggagttggtctgaaaatatgtttataagtgggggtaatcctcacctcacaagccggttttgtgaggttgtgttaagc 24487663  T
Q  371 acaaccacaatttctaata 389  Q
     ||||||| ||||||||||    
T  24487662 ccaaccacgatttctaata 24487644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 24346618 - 24346502
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||  ||||||| | |||||||||||||| | |||||||| || |||||| ||||||| | |||| |||||     
T  24346618 tgttaagagtcccacatcggataggacatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaagccggttttatggggttgtgttaggc 24346519  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||||||||||||    
T  24346518 tcaaccacaatttctaa 24346502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 170625 - 170570
Alignment:
Q  315 tttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||||||||||||||| || |||||| |||| |||| |||| |||||    
T  170625 tttataagtgggggcagtcctcacctcacaagccggttttgtgaggttgtgttagg 170570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 2063850 - 2063784
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| |||||||  ||||  |||| ||||||| | |||||||||||||||| |||||||    
T  2063850 tgttaagagtcccacatcggatagaacatggtctgacaatgtgtttataagtgggggcaatcctcac 2063784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 4481680 - 4481614
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||| |||||||  |||||||||  ||||||| | ||||||| |||||||| |||||||    
T  4481680 tgttaagagtcccacatcggatagaagttggcctgacaatgtgtttataaatgggggcaatcctcac 4481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 42295546 - 42295628
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| ||||| || || ||||||  ||| ||||| |||||||||||| ||| |||||||| || |||||| ||||    
T  42295546 tgttaagagtcccacatcagttaggagttggcctgataatttgtttataagtgggagcaatcctcacctcacaagccggtttt 42295628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 6413510 - 6413461
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||| | |||||||||||||||| |||||||| || |||||||||||    
T  6413510 tgacaatgtgtttataagtgggggcaatcctcacctcataagccgatttt 6413461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 9368561 - 9368678
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||| ||||||||  || || |||  ||||||| | ||||||||||| |||| |||||||| || |||||| |||| || | |||| |||||    
T  9368561 ctgttaagagtcatacatcggataggagatggcgtgacaatgtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggttgtgttagg 9368660  T
Q  371 -acaaccacaatttctaa 387  Q
      |||||| |||||||||    
T  9368661 cccaaccataatttctaa 9368678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 24531599 - 24531648
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||| | |||||||||||||||| |||||||| || |||||||||||    
T  24531599 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccgatttt 24531648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 38731687 - 38731622
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    |||||||||||||||||||| | ||| ||  |||| || |||||||||||||||| |||| |||||    
T  38731687 tgacaatttatttataagtgagagcaatcaccacctcacaagccgattttatgaggttgtgttagg 38731622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 8287771 - 8287886
Alignment:
Q  274 ttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-ac 372  Q
    |||||||||  |||||||  || ||||||| || |||||| ||||||||| |||||| ||| |||| || |||||| |||| || | |||| |||||  |    
T  8287771 ttaagagtcacacatcggctaggagttggtctggcaatttgtttataagt-ggggcaatccccacctcacaagccggttttgtggggttgtgttaggccc 8287869  T
Q  373 aaccacaatttctaata 389  Q
    |||||||||||||||||    
T  8287870 aaccacaatttctaata 8287886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 18333582 - 18333466
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||| ||| |||||||  || || |||| ||||||| | |||||||||||||| | |||||||| || |||||| |||| || | |||| |||||     
T  18333582 tgttaagaatcccacatcggataggagatggtctgacaatgtgtttataagtgggggtaatcctcacctcacaagccggttttgtggggttgtgttaggc 18333483  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||||| ||||||    
T  18333482 ccaaccacaaattctaa 18333466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 41666874 - 41666758
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||  ||||||| | |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  41666874 tgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 41666775  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  41666774 ccaaccacgatttctaa 41666758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 387
Target Start/End: Complemental strand, 41667110 - 41666994
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg- 370  Q
    |||||||||||| |||||||  || |  |||  ||||||| | |||||||||||||||| |||||||| || |||||| |||| || | |||| |||||     
T  41667110 tgttaagagtcccacatcggacaggacatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 41667011  T
Q  371 acaaccacaatttctaa 387  Q
     ||||||| ||||||||    
T  41667010 ccaaccacgatttctaa 41666994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 389
Target Start/End: Original strand, 56424 - 56544
Alignment:
Q  270 tctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattag 369  Q
    |||||||||||||| |||||||| || ||||| | ||||||||| ||||||| || ||||| || ||||| || |||||| |||| || | |||| ||||    
T  56424 tctgttaagagtcccacatcggttaggagttgatctgacaatttgtttataactgtgggcaatcatcacctcacaagccggttttgtggggttgtgttag 56523  T
Q  370 g-acaaccacaatttctaata 389  Q
    |  ||||||| ||||||||||    
T  56524 gcccaaccacgatttctaata 56544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1034 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 3199 - 3261
Alignment:
Q  268 catctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggca 330  Q
    ||||||||||||||||||||||||| || ||||||  | || |||| ||||||||||||||||    
T  3199 catctgttaagagtcctacatcggttaggagttggccttactatttgtttataagtgggggca 3261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 4546 - 4464
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||| | ||||| || || ||||||  ||||||||| |||||||||||||||| |||||||| || |||||| ||||    
T  4546 tgttaagagtgccacatcagttaggagttggcctgacaatttgtttataagtgggggcaatcctcacctcacaagccggtttt 4464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 12642 - 12726
Alignment:
Q  300 tggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg-acaaccacaattt 383  Q
    |||||||||||| |||||||| ||||||||| |||||||| || ||| ||||||| || | |||| |||||  ||||||||||||    
T  12642 tggtttgacaatgtatttatatgtgggggcaatcctcacctcacaagtcgattttgtgtggttgtgttaggcccaaccacaattt 12726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 354
Target Start/End: Complemental strand, 3588 - 3506
Alignment:
Q  272 tgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    |||||||||||| |||||||| || |||||   ||||||||| ||||||||||||| || || ||||| || |||||| ||||    
T  3588 tgttaagagtcccacatcggttaggagttgacatgacaatttgtttataagtggggacaatcttcacctcacaagccggtttt 3506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 6274 - 6323
Alignment:
Q  305 tgacaatttatttataagtgggggcagtcctcaccccaaaagccgatttt 354  Q
    ||||||| | |||||||||||||||| |||||||| || |||||||||||    
T  6274 tgacaatgtgtttataagtgggggcaatcctcacctcacaagccgatttt 6323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 1882 - 1999
Alignment:
Q  271 ctgttaagagtcctacatcggtaagaagttggtttgacaatttatttataagtgggggcagtcctcaccccaaaagccgattttatgagattgtattagg 370  Q
    ||||||||||||| |||||||  || |  |||| ||||||| | |||||||||||||||| ||||||||  | |||||| |||| || | |||| |||||    
T  1882 ctgttaagagtcccacatcggacaggacatggtctgacaatgtgtttataagtgggggcaatcctcaccttacaagccggttttgtggggttgtgttagg 1981  T
Q  371 -acaaccacaatttctaa 387  Q
      ||||||| ||||||||    
T  1982 cccaaccaccatttctaa 1999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 5635 - 5595
Alignment:
Q  298 gttggtttgacaatttatttataagtgggggcagtcctcac 338  Q
    |||||||||||||| | |||||||||||||||| |||||||    
T  5635 gttggtttgacaatgtgtttataagtgggggcaatcctcac 5595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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