View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_low_4 (Length: 444)
Name: NF16820_low_4
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 35070688 - 35071114
Alignment:
| Q |
1 |
actagtttcttataatctcactatttctatagtagcagttgcggccacttgaaatcgcataaacatcaaaatcatcgatgttgcggctcagatcactgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35070688 |
actagtttcttataatctcactatttctatagtagcagttgcggccacttgagatcgcataaacatcaaaatcatcgatgttgcggctcagatcactgtc |
35070787 |
T |
|
| Q |
101 |
aatgacttatataaaacctttttcgaaatattgatctatatcaacttgtgcaggttacacactacatgttgaaagcggcaagacctatctcctacgcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35070788 |
aatgacttatataaaacctttttcgaaatattgatctttatcaacttgtgcaggttacacactacatgttgaaagcggcaagacctatctcctacgcatt |
35070887 |
T |
|
| Q |
201 |
ataaatgcagctttaaacgacgaattattcttcaaaattgcaggccataaactaatagttgttgaagcagatgcatcataccttaaacctttcgaaatcg |
300 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35070888 |
ataaacgcagctttaaacgacgaactattcttcaaaattgcaggccataaactaatagttgttgaagcagatgcatcataccttaaacctttcgaaatcg |
35070987 |
T |
|
| Q |
301 |
acacaatatttctaagtccaggccaaaccacaaatgttcttctaactgcaaaccaacctattggcaaatacttaatagcaataacacctttcatggatgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35070988 |
acacaatatttctaagtccaggccaaaccacaaatgttcttctaactgcaaaccaacctattggcaaatacttaatagcaataacacctttcatggatgc |
35071087 |
T |
|
| Q |
401 |
acctattggctttgacaatctttcttc |
427 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
35071088 |
acctattggctttgacaatctttcttc |
35071114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 312 - 427
Target Start/End: Original strand, 35054257 - 35054372
Alignment:
| Q |
312 |
ctaagtccaggccaaaccacaaatgttcttctaactgcaaaccaacctattggcaaatacttaatagcaataacacctttcatggatgcacctattggct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054257 |
ctaagtccaggccaaaccacaaatgttcttctaactgcaaaccaacctattggcaaatacttaatagcaataacacctttcatggatgcacctattggct |
35054356 |
T |
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| Q |
412 |
ttgacaatctttcttc |
427 |
Q |
| |
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|||||||||||||||| |
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| T |
35054357 |
ttgacaatctttcttc |
35054372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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