View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_low_5 (Length: 441)
Name: NF16820_low_5
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 113 - 426
Target Start/End: Original strand, 46996014 - 46996321
Alignment:
| Q |
113 |
aaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttttcca |
212 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46996014 |
aaaacagtgtaagaatgaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttg---- |
46996109 |
T |
|
| Q |
213 |
tcagattctcaatgaaatgttgttggtttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatccca |
312 |
Q |
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|| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996110 |
--agtttgtcaatgaaatgctgttggtttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatccca |
46996207 |
T |
|
| Q |
313 |
aggtgctaaatagcaaatttgctttgagtcttcaattggagaataaggtttgataaagcattcagaaacgagttttaaacaatgggtgctcatcatttag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996208 |
aggtgctaaatagcaaatttgctttgagtcttcaattggaggataaggtttgataaagcattcagaaacgagttttaaacaatgggtgctcatcatttag |
46996307 |
T |
|
| Q |
413 |
atgtgtgttgtagc |
426 |
Q |
| |
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|||||||||||||| |
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| T |
46996308 |
atgtgtgttgtagc |
46996321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 113 - 381
Target Start/End: Original strand, 46998262 - 46998539
Alignment:
| Q |
113 |
aaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagt------gtt |
206 |
Q |
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|||| ||||||| ||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46998262 |
aaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtt |
46998361 |
T |
|
| Q |
207 |
tttccatcagattctcaatgaaatgttgttggtttag---tgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgac |
303 |
Q |
| |
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| || | || ||||| ||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||| ||||| | ||||| |||||| |
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| T |
46998362 |
tctctaccaagttctctatgaaatgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgcagataacatgct |
46998461 |
T |
|
| Q |
304 |
aatatcccaaggtgctaaatagcaaatttgctttgagtcttcaattggagaataaggtttgataaagcattcagaaac |
381 |
Q |
| |
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||||||||||||| |||||||||| ||||| ||||||||||| ||||| | | | ||||||||||| ||||||||||| |
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| T |
46998462 |
aatatcccaaggtcctaaatagcatatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaac |
46998539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 112 - 383
Target Start/End: Original strand, 46981185 - 46981465
Alignment:
| Q |
112 |
gaaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagt------gt |
205 |
Q |
| |
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||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| || |
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| T |
46981185 |
gaaaacagtgtaagaatcaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaagggagtgtttcagt |
46981284 |
T |
|
| Q |
206 |
ttttccatcagattctcaatgaaatgttgttggtttag---tgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatga |
302 |
Q |
| |
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|| |||| ||| ||||| |||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||| |||||| | ||| |||||| |
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| T |
46981285 |
ttctccaccaggttctctatgaaatgttgttggtttagtgatgatgatgttggttttttgaagataagtcccttttggttataatgtgtagataacatgg |
46981384 |
T |
|
| Q |
303 |
caatatcccaaggtgctaaatagcaaatttgctttgagtcttcaattggagaataaggtttgataaagcattcagaaacga |
383 |
Q |
| |
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||||||||||| ||| |||||| || ||||| |||||||||| |||| | ||||||||| ||||| ||| |||||||| |
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| T |
46981385 |
caatatcccaatgtgttaaataacatatttgatttgagtctttgattgtgggataaggtttaataaaacatgaagaaacga |
46981465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 112 - 381
Target Start/End: Original strand, 46975198 - 46975473
Alignment:
| Q |
112 |
gaaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttt--- |
208 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||||||| |||| || ||||||| |||| ||||||||||| ||||| |||||||| |
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| T |
46975198 |
gaaaacagtgtaagaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaagagagtgtttgagt |
46975297 |
T |
|
| Q |
209 |
---tccatcagattctcaatgaaatgttgttggtttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaa |
305 |
Q |
| |
|
|||| || ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | | ||| |||||| ||| |
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| T |
46975298 |
ttgtccactaggttctcaatgaagtgttgttggtttagtgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaa |
46975397 |
T |
|
| Q |
306 |
tatcccaaggtgctaaatagcaaatttgctttgagtcttcaattggagaataaggtttgataaagcattcagaaac |
381 |
Q |
| |
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|||||||| ||| || |||||| ||||| |||||||||| || || | ||||||||| ||||| ||| ||||||| |
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| T |
46975398 |
tatcccaatgtgttagatagcatatttggtttgagtctttgatagggggataaggtttaataaaacatgcagaaac |
46975473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 47001874 - 47001979
Alignment:
| Q |
5 |
caggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgagg |
104 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47001874 |
caggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctcctcgactgtttttgcaatcgacaaaaacagtgtaagaatgagg |
47001973 |
T |
|
| Q |
105 |
accttc |
110 |
Q |
| |
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| |||| |
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|
| T |
47001974 |
atcttc |
47001979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 46995936 - 46996042
Alignment:
| Q |
7 |
ggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggac |
106 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995936 |
ggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcgacaaaaacagtgtaagaatgaggat |
46996035 |
T |
|
| Q |
107 |
cttcgga |
113 |
Q |
| |
|
||||||| |
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|
| T |
46996036 |
cttcgga |
46996042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 46998182 - 46998281
Alignment:
| Q |
5 |
caggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgagg |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
46998182 |
caggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcaacaaaaacagtgtaaaaatgagg |
46998281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 46975121 - 46975218
Alignment:
| Q |
7 |
ggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgagg |
104 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
46975121 |
ggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgtttttgcaatcaacgaaaacagtgtaagaatgagg |
46975218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 46981121 - 46981214
Alignment:
| Q |
20 |
cattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggaccttcgga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||| ||||||| |
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|
| T |
46981121 |
catttatggtgatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacgaaaacagtgtaagaatcaggatcttcgga |
46981214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 47002008 - 47002133
Alignment:
| Q |
256 |
ttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttcaattggagaa |
355 |
Q |
| |
|
||||||||||||||| ||||||||||||| | | ||| | |||| |||||||||||||| |||||||||| ||||| ||||||||||| ||||| | | |
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|
| T |
47002008 |
ttttttgaagagaagtcccttttggatatagtgtgaagatatcatggcaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
47002107 |
T |
|
| Q |
356 |
taaggtttgataaagcattcagaaac |
381 |
Q |
| |
|
|| |||||||| || ||||||||||| |
|
|
| T |
47002108 |
tatggtttgatgaaacattcagaaac |
47002133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 47001954 - 47002005
Alignment:
| Q |
113 |
aaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctg |
164 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47001954 |
aaaacagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctg |
47002005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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