View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_low_6 (Length: 401)
Name: NF16820_low_6
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 385
Target Start/End: Complemental strand, 43405543 - 43405170
Alignment:
| Q |
14 |
tactatggttcatttcaacggtataaattcaatgtgtcacatgctatgtttgattggatttaaaaattgcatagttatgtttcattgtgctgatcctaag |
113 |
Q |
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| T |
43405543 |
tactatggttcatt-caacggtataaattcaatgtgtcacatgctatgtttgattggatttaaaaattacatagttatgtttcattgtgctgatcctaag |
43405445 |
T |
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| Q |
114 |
atagttattcaagattgatttttgccaaatccatcatttttt--gtcttaacagcgtgcaatgtaatcattctaaagcagggtgatcaaacatttctcta |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43405444 |
atagttattcaagattgatttttgtcaaatccatcattttttttgtcttaacagcgtgcaatgtaatcattctaaagcagggtgatcaaacatttctcta |
43405345 |
T |
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| Q |
212 |
tctcacagttaccattgattcattagcatcctaacttttgtataataagttcctgaccaaaagacaagtc-nnnnnnnnngtgccttttttgggtatgta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43405344 |
tctcacagttaccattgattcattagcatcctaacttttgtataataagttcctgaccaaaagacaagtcttttgtttttgtgccttttttgggtatgta |
43405245 |
T |
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| Q |
311 |
ctgtccagtattataaaggaaacaaagaaacaagtgtgtgttgatgcagatgcagtagtaggaggcctgattatt |
385 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43405244 |
ctatccaatattataaaggaaacaaagaaacaagtgtgtgttgatgcagatgcagtagtaggaggcctgattatt |
43405170 |
T |
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