View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16820_low_7 (Length: 375)
Name: NF16820_low_7
Description: NF16820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16820_low_7 |
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| [»] scaffold0531 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 7971320 - 7971676
Alignment:
| Q |
1 |
aacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatacta |
100 |
Q |
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||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7971320 |
aacagagccaagtgcattaaagaaattaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatacta |
7971419 |
T |
|
| Q |
101 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcaatccacaagttacttataaagagtgatgaaaataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7971420 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcattccacaagttacttataaagagtgatgaaaataaa |
7971519 |
T |
|
| Q |
201 |
atgaaatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacacc |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7971520 |
atgaaatccaaaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacatgacggctgccaccaaagatacacc |
7971619 |
T |
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| Q |
301 |
ggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagat |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7971620 |
ggaaatggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagat |
7971676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8042393 - 8042188
Alignment:
| Q |
1 |
aacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatacta |
100 |
Q |
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||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8042393 |
aacagagccaagtgcattaaagaaataaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatacta |
8042294 |
T |
|
| Q |
101 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttc--aatccacaagttacttataaagagtgatgaaaata |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||| |||||||| |
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| T |
8042293 |
ccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcatattccacaagttggatataatgagtggtgaaaata |
8042194 |
T |
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| Q |
199 |
aaatga |
204 |
Q |
| |
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|||||| |
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| T |
8042193 |
aaatga |
8042188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 205 - 357
Target Start/End: Complemental strand, 8042164 - 8042012
Alignment:
| Q |
205 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8042164 |
aatccaaaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacatgacggctgccaccaaagatacaccggaa |
8042065 |
T |
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| Q |
305 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagat |
357 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8042064 |
atggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagat |
8042012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 205 - 357
Target Start/End: Complemental strand, 8032284 - 8032133
Alignment:
| Q |
205 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
304 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| |||||||||||| |
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| T |
8032284 |
aatccaaaatacatatttgagcctaaaa-gtaatatagagaatagaaagatgtcgatataccaaatggacatgactgctgcaaccaaggatacaccggaa |
8032186 |
T |
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| Q |
305 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagat |
357 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
8032185 |
atggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagat |
8032133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8032489 - 8032363
Alignment:
| Q |
1 |
aacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatacta |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| | |||| |
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| T |
8032489 |
aacagagccgagtgcattaaagaaattaaagactgattctgcagtatttgtagccttgctactatattgtacattttcttgtactcccttgtgtacacta |
8032390 |
T |
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| Q |
101 |
ccagcccaagcaattgtagagtaactg |
127 |
Q |
| |
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|| ||||||||||||||| |||||| |
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| T |
8032389 |
gtagtccaagcaattgtagaataactg |
8032363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 205 - 357
Target Start/End: Original strand, 3047 - 3199
Alignment:
| Q |
205 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
304 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||| ||||||||| | | ||| || |||||||| |||||||| || |||||||||||||||||||| ||| |
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| T |
3047 |
aatccaaaatacatatttgagtctaaaaagtactatagagaacagatagaagtagatataccaaatggacatgactgctgccaccaaagatacaccagaa |
3146 |
T |
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| Q |
305 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagat |
357 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
3147 |
atggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagat |
3199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 2628 - 2744
Alignment:
| Q |
11 |
agtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatactaccagcccaag |
110 |
Q |
| |
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|||||||||||||||| |||||| ||| |||| | || ||||| || |||||||||||||||||||||| |||||||||||| || ||| ||||| |
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| T |
2628 |
agtgcattaaagaaattaaagactgattctgcggccgtcgtagcgtttctactatattgtacattttctattactcccttgtgtgcaccggcagtccaag |
2727 |
T |
|
| Q |
111 |
caattgtagagtaactg |
127 |
Q |
| |
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|||| |||||||||||| |
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| T |
2728 |
caatagtagagtaactg |
2744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 41381767 - 41381888
Alignment:
| Q |
11 |
agtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatactaccagcccaag |
110 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||| || ||||||||| |||||||||||||| || ||||||||||||| | ||||||| |||||| |
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| T |
41381767 |
agtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattgtacatttgcttgtactcccttgtgtacactaccaacccaag |
41381866 |
T |
|
| Q |
111 |
caattgtagagtaactgaaaca |
132 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
41381867 |
caattgcagagtaactgaaaca |
41381888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 41381989 - 41382075
Alignment:
| Q |
271 |
ggacataacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagat |
357 |
Q |
| |
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||||||||| ||||| || |||||||||| |||| |||||| | ||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
41381989 |
ggacataactgctgcaacaaaagatacactagaaagggagttgaggttgggtagatgacacaatacaaattgagcagaggcaaagat |
41382075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 14198574 - 14198638
Alignment:
| Q |
290 |
aaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaa |
354 |
Q |
| |
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||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||| |||||||||| |
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| T |
14198574 |
aaagagacaccagaaatagagttcaagttagggaggtgagacaagacaaagtgaacagaggcaaa |
14198638 |
T |
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