View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_high_10 (Length: 345)
Name: NF16821_high_10
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 11655226 - 11655386
Alignment:
| Q |
170 |
attactgtgcagaaatactcatgttagtcttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
269 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655226 |
attactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
11655325 |
T |
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| Q |
270 |
aatatgacaatatggcgtgaaaaagaagagctaaaaattaattttatgtttggatggttat |
330 |
Q |
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| T |
11655326 |
aatatgtcaaaatggcgtgaaaaagaagagctaaaaattaactttatttttgtttggttat |
11655386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 16033300 - 16033460
Alignment:
| Q |
170 |
attactgtgcagaaatactcatgttagtcttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
269 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16033300 |
attactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
16033399 |
T |
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| Q |
270 |
aatatgacaatatggcgtgaaaaagaagagctaaaaattaattttatgtttggatggttat |
330 |
Q |
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| T |
16033400 |
aatatgtcaaaatggcgtgaaaaagaagagctaaaaattaactttatttttgtttggttat |
16033460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 170 - 330
Target Start/End: Complemental strand, 7394059 - 7393899
Alignment:
| Q |
170 |
attactgtgcagaaatactcatgttagtcttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
269 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7394059 |
attactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
7393960 |
T |
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| Q |
270 |
aatatgacaatatggcgtgaaaaagaagagctaaaaattaattttatgtttggatggttat |
330 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
7393959 |
aatatgtcaaaatggcgtgaaaaagaagagctaaaaattaactttatttttgtttggttat |
7393899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 19583049 - 19583209
Alignment:
| Q |
170 |
attactgtgcagaaatactcatgttagtcttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
269 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19583049 |
attactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagctaagtgtctggctgccactatgtagtctaaacaatgct |
19583148 |
T |
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| Q |
270 |
aatatgacaatatggcgtgaaaaagaagagctaaaaattaattttatgtttggatggttat |
330 |
Q |
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|||||| ||| |||||| ||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
19583149 |
aatatgtcaaaatggcgcgaaaaagaagagctaaaaattaactttatttttgtttggttat |
19583209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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