View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_high_16 (Length: 250)
Name: NF16821_high_16
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_high_16 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 45072850 - 45072748
Alignment:
| Q |
148 |
gctcaagattggttgataacacattataaccatattttaatataatttagtagttaacttttcttaaatttaaaaatgataaataaagtactaattgttg |
247 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45072850 |
gctcaagattggttgataacacattatgaccatattttaatataatttagtagttaacttttcttaaatttaaaaatgataaataaagtactaattgttg |
45072751 |
T |
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| Q |
248 |
ttt |
250 |
Q |
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||| |
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| T |
45072750 |
ttt |
45072748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 45072992 - 45072952
Alignment:
| Q |
6 |
agtgaaatgaaagtgtgagagaaggaaaggagtatagttat |
46 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
45072992 |
agtgaaaagaaagtgtgagagaaagaaaggagtatagttat |
45072952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 8399830 - 8399932
Alignment:
| Q |
148 |
gctcaagattggttgataacacattataaccatattttaatataatttagtagttaacttttcttaaatttaaaaatgataaataaagtactaattgttg |
247 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8399830 |
gctcaagattggttgataacacattatgaccatattttaatataatttagtagttaacttttcttaaatttaaaaatgataaataaagtactaattgttg |
8399929 |
T |
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| Q |
248 |
ttt |
250 |
Q |
| |
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||| |
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| T |
8399930 |
ttt |
8399932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 26537090 - 26536988
Alignment:
| Q |
148 |
gctcaagattggttgataacacattataaccatattttaatataatttagtagttaacttttcttaaatttaaaaatgataaataaagtactaattgttg |
247 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26537090 |
gctcaagattggttgataacacaatatgaccatattttaatataatttagtagttaacttttcttaaatttaaaaatgataaataaagtactaattgttg |
26536991 |
T |
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| Q |
248 |
ttt |
250 |
Q |
| |
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||| |
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|
| T |
26536990 |
ttt |
26536988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8399688 - 8399728
Alignment:
| Q |
6 |
agtgaaatgaaagtgtgagagaaggaaaggagtatagttat |
46 |
Q |
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|
||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
8399688 |
agtgaaaagaaagtgtgagagaaagaaaggagtatagttat |
8399728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 26537232 - 26537192
Alignment:
| Q |
6 |
agtgaaatgaaagtgtgagagaaggaaaggagtatagttat |
46 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
26537232 |
agtgaaaagaaagtgtgagagaaagaaaggagtatagttat |
26537192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 34002 - 34099
Alignment:
| Q |
148 |
gctcaagattggttgataacacatta-taaccatattttaatataa-tttagtagttaacttttcttaaatttaaaaatgataaataaagtactaatt |
243 |
Q |
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||||||||||||||||||||||| || | ||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
34002 |
gctcaagattggttgataacacaataatgaccatattttaatataagtttactagttaacttctcttaaatttaaaaattataaataaagtactaatt |
34099 |
T |
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