View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16821_high_2 (Length: 611)
Name: NF16821_high_2
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 161 - 594
Target Start/End: Complemental strand, 36960355 - 36959922
Alignment:
| Q |
161 |
atgattgttgcttcttcattccattccaaaataaaaccaaatcggatcatagtatttttaatnnnnnnnctaactagctaataaataaaaagtcatttcg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36960355 |
atgattgttgcttcttcattccattccaaaataaaaccaaatcggatcatagtatttttaatcaaaaaactaactagctaataaataaaaagtcatttcg |
36960256 |
T |
|
| Q |
261 |
atctttaaatatgtcaagcgctctcactataatcattgatggaatgaatttaaattataaaaacatcttgaatgtgtttgttattaatgagtatgattct |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960255 |
atctttaaatatgtcaagcgctctcactataatcattgatggaatgaatttaaattataaaaacatcttgaatgtgtttgttattaatgagtatgattct |
36960156 |
T |
|
| Q |
361 |
cgaatgtattatttctttgttagtttgatcttcaaatttctcttatgttggtcaatttaaacaacaaaattattagaaaatggcatagtcaaggatgtta |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
36960155 |
cgaatgtattatttctttgttagtttgatcttcaaatttctcttatgttggtcaatttaaacaacgaaatcattagaaaatggcatagtcaaggatgtta |
36960056 |
T |
|
| Q |
461 |
ttataattttgatatattttagaactatagtgacacacacagcctcgcatatttttggaccaaaatgataattcactctaataataacttgtttgtattt |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960055 |
ttataattttgatatattttagaactatagtgacacacacagcctcgcatatttttggaccaaaatgataattcactctaataataacttgtttgtattt |
36959956 |
T |
|
| Q |
561 |
tctcgcttgaaagatagttatgggcattcactat |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36959955 |
tctcgcttgaaagatagttatgggcattcactat |
36959922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 36960541 - 36960399
Alignment:
| Q |
1 |
atgaactagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagaggccttgatgtcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960541 |
atgaactagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagaggccttgatgtcaatt |
36960442 |
T |
|
| Q |
101 |
ttacatttgatatcaagaaaatgtctgtaatttaatgttagtg |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960441 |
ttacatttgatatcaagaaaatgtctgtaatttaatgttagtg |
36960399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University