View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_low_1 (Length: 724)
Name: NF16821_low_1
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 13 - 708
Target Start/End: Complemental strand, 11826406 - 11825710
Alignment:
| Q |
13 |
aaaatcagatattagtacaagttaacctgttctaggcatgaaactagacatacagttaatcattttaggcacctcttaccggttcaatatccaggtttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11826406 |
aaaatcagatattagtacaagttaacctgttctaggcatgaaactagacatacagttaatcattttaggcacctcttaccggttcaatatccaggtttat |
11826307 |
T |
|
| Q |
113 |
atccctattgacatcaatatctaaaacagaatgtttttctatccaaaagaaaaataatcttctaaattcaataggcatgtaactgaactaaaactatata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11826306 |
atccctattgacatcaatatctaaaacagaatgtttttctatccaaaagaaaaataatcttctaaattcaataggcatgtaactgaactaaaactatatg |
11826207 |
T |
|
| Q |
213 |
acccnnnnnnnnnnnnnnnnnnnnggctgcagaaattttgaatttaagccctgcaaatctattcgctgaaaattaaatagagcatagaatcgagtatcga |
312 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11826206 |
acccttttttttgaatttttatttggctgcagaaactttgaatttaagccctgcaaatctattcgctgaaaattaaatagagcatagaatcgagtatcga |
11826107 |
T |
|
| Q |
313 |
cacatgatttggtttaactattaagttgtagctattttgacttaaatatgtaatacagctgttctttattttcaacttctttgtccctaatcacctgaaa |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11826106 |
cacatgatttggtttaactattaagttgtagctattttgacttaaatatgtaatacaactgttctttattttcaacttctttgtccctaatcacttgaaa |
11826007 |
T |
|
| Q |
413 |
aagtgaagttccatgaggatggttcacctatcttctaaactttgttgttcttatatatcagataacaatcttggccgctgctgaaggaaaacataaactt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11826006 |
aagtgaagttccatgaggatggttcacctatcttctaaactttgttgttcttatatatcagataacaatcttggccgctgctgaaggagaacataaactt |
11825907 |
T |
|
| Q |
513 |
cctaccatcaatggaagtggaaaattgaaggaagctttacaaaaacttggatccattccttcgagcaaattattagtaagatcagcaatagttccaagtc |
612 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11825906 |
cctagcatcaatggaagtggaaaattgaaggaagctttacaaaaacttgtatccattccttcgagcaaattattagtaagatcagcaatagttccaagtc |
11825807 |
T |
|
| Q |
613 |
attttcagatgttgctagta-cnnnnnnnnnacacgatttttctataattacttgcaggcagttgaggtgttatggaccccacaagatgaaaatgat |
708 |
Q |
| |
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|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11825806 |
attttcagatgttgttagtacctttttttttacacgatttttctataattacttgcaggcagttgaggtgttatggaccccacaagatgaaaatgat |
11825710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 299 - 708
Target Start/End: Complemental strand, 23094005 - 23093590
Alignment:
| Q |
299 |
gaatcgagtatcgacacatgatttggtttaactattaagttgtagctattttgacttaaatatgt----aatacagctgttctttattttcaacttcttt |
394 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
23094005 |
gaatcgaatatcgacacatgatttggtttaactattaagttgtagctattttgacttaaatatgtttgtaatacaagtgttctttattttcaacttcttt |
23093906 |
T |
|
| Q |
395 |
gtccctaatcacctgaaaaagtgaagttccatgaggatggttcacctatcttctaaactttgttgttcttatatat--cagataacaatcttggccgctg |
492 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
23093905 |
gtccctaatcacttgaaaaagtgaagttccatgtggatggttcacctatcttctaaactttgttgttcttatatatatcagataacaatcttggccgctg |
23093806 |
T |
|
| Q |
493 |
ctgaaggaaaacataaacttcctaccatcaatggaagtggaaaattgaaggaagctttacaaaaacttggatccattccttcgagcaaattattagtaag |
592 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23093805 |
ctgaaggagaacataaacttcctagcatcaatggaagtggaaacttgaaggaagctttacaaaaacttggatccattccttcgagcaaattattagtaag |
23093706 |
T |
|
| Q |
593 |
atcagcaatagttccaagtcattttcagatgttgctagtacnnnnnnnnnacacgatttttctataattacttgcaggcagttgaggtgttatggacccc |
692 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
23093705 |
atcagtaatagttccaagtcattttcagatgttgttggtactttttttttacacgatttttctataactacttgcaggcagttgaggttttatggacccc |
23093606 |
T |
|
| Q |
693 |
acaagatgaaaatgat |
708 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
23093605 |
acaagatgaaaatgat |
23093590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 23094330 - 23094186
Alignment:
| Q |
13 |
aaaatcagatattagtacaagttaacctgttctaggcatgaaactagacatacagttaatcattttaggcacctcttaccggttcaatatccaggtttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
23094330 |
aaaatcagatattagtacaagttaacctgttctatgcatgaaactagacatacagttaatcattttaggcacctcttactggttcaatatccaggtttat |
23094231 |
T |
|
| Q |
113 |
atccctattgacatcaatatctaaaacagaatgtttttctatcca |
157 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
23094230 |
atccctattcacatcaatatctaaaacagaatgtgtttctatcca |
23094186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 1495475 - 1495512
Alignment:
| Q |
491 |
tgctgaaggaaaacataaacttcctaccatcaatggaa |
528 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
1495475 |
tgctgaaggagaacataaacttcctagcatcaatggaa |
1495512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 445 - 708
Target Start/End: Original strand, 47348304 - 47348564
Alignment:
| Q |
445 |
ttctaaactttgttgttcttatatatcagataacaatcttggccgctgctgaaggaaaacataaacttcctaccatcaatggaagtggaaaattgaagga |
544 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
47348304 |
ttctaaactttgtttttcttatatatcagataacaatcttggctgctgctgaaggagaacataaacttcctggcatcaatggaagtggaaacttgaagga |
47348403 |
T |
|
| Q |
545 |
agctttacaaaaacttggatccattccttcgagcaaattattagtaagatcagcaatag-ttccaagtcattttcagatgttgctagtacnnnnnnnnna |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||| | |
|
|
| T |
47348404 |
agctttacaaaaacttggatccattccttcgagcaaattattagtaagatcaataatagtttgcaagtcattttcagatgttctcagtacctttttttta |
47348503 |
T |
|
| Q |
644 |
cacgatttttctataattacttgcaggcagttgaggtgttatggaccccacaagatgaaaatgat |
708 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
47348504 |
cacaatttttctataa----ttgcaggcagttgaggtgttatggaccccacaaaatgaaaatgat |
47348564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 47347557 - 47347712
Alignment:
| Q |
17 |
tcagatattagtacaagttaacctgttctaggcatgaaactagacatacagttaatcattttaggcacctcttaccggttcaatatccaggtttatatcc |
116 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47347557 |
tcagatattagtacaagttaatctgctctaggcaagaaactagacatgcaattaatcattttaggcacctcttaccggttcaacatccaggtttatatcc |
47347656 |
T |
|
| Q |
117 |
ctattgacatcaatatctaaaacagaatgtttttctatccaaaagaaaaataatct |
172 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47347657 |
ctattgacatcaatatctaaaaaagaatgtttttctatccaaaagaaaaataatct |
47347712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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