View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16821_low_13 (Length: 309)

Name: NF16821_low_13
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16821_low_13
NF16821_low_13
[»] chr4 (1 HSPs)
chr4 (1-293)||(28842906-28843198)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 28842906 - 28843198
Alignment:
Q  1 actgcaccaaaatcaacaacacaacaatcaaagcagccacaccccatggagaactcccttcagatggactttggtaggttgtgctgcgcctgttcaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28842906 actgcaccaaaatcaacaacacaacaatcaaagcagccacaccccatggagaactcccttcagatggactttggtaggttgtgctgcgcctgttcaaaac 28843005  T
Q  101 agaaggaccagaaaaccaacctgaatcttccattgatgataccaaacgaactataaatatcagcaccactggtaaggcaaatagaatccaaccaaattgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28843006 agaaggaccagaaaaccaacctgaatcttccattgatgataccaaacgaactataaatatcagcaccactggtaaggcaaatagaacccaaccaaattgt 28843105  T
Q  201 tcttgagcagtttcaacaacatcttcataagaaaagtaccatgaagtaccaaggaagatgaagatcactgctaagatcaacagaacaggatat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843106 tcttgagcagtttcaacaacatcttcataagaaaagtaccatgaagtaccaaggaagatgaagatcactgctaagatcaacagaacaggatat 28843198  T

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