View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_low_14 (Length: 302)
Name: NF16821_low_14
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 36832800 - 36832517
Alignment:
| Q |
1 |
tatattaattagttgacgtgtccaaaacatatagtagaatcttactaatggtttttaatgcgtgcaaacaacatcaagaagcaaaactaataagtcagcc |
100 |
Q |
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| T |
36832800 |
tatattaattagttgacgtgtccaaaacatatagtagaatcttactaatggtttttaatgcgtgcaaacaacatcaagaagcaaaactaataagtcagcc |
36832701 |
T |
|
| Q |
101 |
attgtcgaaaacgagattcccattattgtaagtattcatattcttgagtacaaaggttcaaagtcaaatgttatttatcgttaaactaaagttaccatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36832700 |
attgtcgaaaacgagattcccattattgtaagtattcatattcttgagtacaaaggttcaaagtcaaatgttatttatcgttaaactaaagttaccatgt |
36832601 |
T |
|
| Q |
201 |
ttatgctcacgcaccttagcttataaaagataaataaaactccttcnnnnnnnnnnngataaataaattgaattcagataaggtag |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36832600 |
ttatgctcacgcaccttagcttataaaagataaataaaactccttc--aaaaaaaaagataaataaattgaattcagataaggtag |
36832517 |
T |
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