View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16821_low_15 (Length: 294)
Name: NF16821_low_15
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 13419534 - 13419259
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419534 |
ttcctgatagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
13419435 |
T |
|
| Q |
101 |
gaatataggtgttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419434 |
gaatataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
13419335 |
T |
|
| Q |
201 |
aaagaaaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13419334 |
aaagaaaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatcctgatcagatgcaggtat |
13419259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 13426425 - 13426150
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
13426425 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcctggtat |
13426326 |
T |
|
| Q |
101 |
gaatataggtgttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||||||| | |
|
|
| T |
13426325 |
gaatataggcgttgttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagc |
13426226 |
T |
|
| Q |
201 |
aaagaaaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
276 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426225 |
aaagaaaaggaagcgatagaacatttaggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
13426150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 13447085 - 13446810
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13447085 |
ttcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcctggtat |
13446986 |
T |
|
| Q |
101 |
gaatataggtgttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| | |
|
|
| T |
13446985 |
gaatataggagttgttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaa |
13446886 |
T |
|
| Q |
201 |
aaagaaaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
276 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13446885 |
aaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtat |
13446810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 13454027 - 13453764
Alignment:
| Q |
12 |
ttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtg |
111 |
Q |
| |
|
||||||||||||| || | |||||| ||||| ||||| ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
13454027 |
ttacctcttgatgcagctgctcctctcctttgtgctgggataaccgtatatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtg |
13453928 |
T |
|
| Q |
112 |
ttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaagga |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||| | || |||||||| |
|
|
| T |
13453927 |
ttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaagga |
13453828 |
T |
|
| Q |
212 |
agcaatagaacacttgggagctgactcgtttctagtaagccgcgatccagatcagatgcaggta |
275 |
Q |
| |
|
|||| |||||||||| |||| ||||| |||||| ||||||| |||||| | |||||| ||||| |
|
|
| T |
13453827 |
agcattagaacacttacgagcggactcatttctaataagccgtgatccaaagcagatgaaggta |
13453764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 13413177 - 13412946
Alignment:
| Q |
13 |
tacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgt |
112 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| ||||| | || || ||||||||||||||| ||||| |||||| ||||||||| | |||||||||| |
|
|
| T |
13413177 |
tacctcttgaatttgctggtcctctcctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacatataggtgt |
13413078 |
T |
|
| Q |
113 |
tgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaa |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13413077 |
tgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaa |
13412978 |
T |
|
| Q |
213 |
gcaatagaacacttgggagctgactcgtttct |
244 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| |
|
|
| T |
13412977 |
gcaatagaacacttaggagctgattcatttct |
13412946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 13393620 - 13393863
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||| ||||||| ||||| ||| | |||||| ||||| || || || || |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13393620 |
ttcctgatggcttaccacttgaatctgctgctcctctcctttgtgccggtattactgtgtatagtcctcttcgatattttggactcgacaagcctggtat |
13393719 |
T |
|
| Q |
101 |
gaatataggtgttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||| || |||||||| || |||||||||||||| || || |
|
|
| T |
13393720 |
gaatataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaac |
13393819 |
T |
|
| Q |
201 |
aaagaaaaggaagcaatagaacacttgggagctgactcgtttct |
244 |
Q |
| |
|
||||| || |||||||||||| || | |||||||| || ||||| |
|
|
| T |
13393820 |
aaagagaaagaagcaatagaaaacctaggagctgattcatttct |
13393863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 244
Target Start/End: Original strand, 13385424 - 13385635
Alignment:
| Q |
33 |
cctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgttgttggtcttggtggacttg |
132 |
Q |
| |
|
||||| ||||| ||||| || || ||||| ||||||||| || | |||| ||||||||| |||||| | || | |||||||||||||||||||| |||| |
|
|
| T |
13385424 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatactttggactcgacaaacctggtcttcatgtcggtgttgttggtcttggtgggcttg |
13385523 |
T |
|
| Q |
133 |
gtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagc |
232 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
13385524 |
gtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagc |
13385623 |
T |
|
| Q |
233 |
tgactcgtttct |
244 |
Q |
| |
|
||| || ||||| |
|
|
| T |
13385624 |
tgattcatttct |
13385635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 13389245 - 13389444
Alignment:
| Q |
33 |
cctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgttgttggtcttggtggacttg |
132 |
Q |
| |
|
||||| ||||| ||||| || || ||||| ||||||||| || ||| || |||||| || |||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
13389245 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatattatggactcgataaacctggtcttcgtataggtgttgttggtcttggtgggcttg |
13389344 |
T |
|
| Q |
133 |
gtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagc |
232 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||| | ||| || || ||||||||||| || ||||||| || ||||||||||||||||| ||||| |
|
|
| T |
13389345 |
gtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagc |
13389444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13373276 - 13373039
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||| |||||| ||||||| || | |||||||||||| || || || ||||| ||||| ||| | | |||||| ||| ||||||||||| | |
|
|
| T |
13373276 |
ttcctgatgccttaccacttgatgccgctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggttt |
13373177 |
T |
|
| Q |
101 |
gaatataggtgttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
200 |
Q |
| |
|
|| | ||||| ||||||||||||||| | ||||||||||||||||||||| | |||||||| ||||||||||| || || || || || || ||| || |
|
|
| T |
13373176 |
acatgtgggtgtggttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaac |
13373077 |
T |
|
| Q |
201 |
aaagaaaaggaagcaatagaacacttgggagctgactc |
238 |
Q |
| |
|
||| | |||||||| || |||||||| ||||||||||| |
|
|
| T |
13373076 |
aaaaagaaggaagccattgaacacttaggagctgactc |
13373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 13379055 - 13378835
Alignment:
| Q |
18 |
cttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgttgttg |
117 |
Q |
| |
|
||||||| ||||| |||||| ||||| ||||| || ||||||||||| || | |||||||| | | ||||| ||||| || |||||||||| |||| |
|
|
| T |
13379055 |
cttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttg |
13378956 |
T |
|
| Q |
118 |
gtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaat |
217 |
Q |
| |
|
||||||||||| | ||||||||||||||||| || || ||||| || |||| ||| || || || | ||||| || ||| ||||| | |||||||| || |
|
|
| T |
13378955 |
gtcttggtggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccat |
13378856 |
T |
|
| Q |
218 |
agaacacttgggagctgactc |
238 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
13378855 |
tgaacgcttaggagctgactc |
13378835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 47601325 - 47601119
Alignment:
| Q |
32 |
tcctcttctttgcgctggaataacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatataggtgttgttggtcttggtggactt |
131 |
Q |
| |
|
|||||||||||| || || || ||||||||||||||||||||| |||||| |||||| || ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47601325 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggactt |
47601226 |
T |
|
| Q |
132 |
ggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggag |
231 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| || ||||||||||| |||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| |
|
|
| T |
47601225 |
ggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
47601126 |
T |
|
| Q |
232 |
ctgactc |
238 |
Q |
| |
|
||||||| |
|
|
| T |
47601125 |
ctgactc |
47601119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 276
Target Start/End: Original strand, 28430701 - 28430871
Alignment:
| Q |
106 |
taggtgttgttggtcttggtggacttggtcatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaaga |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || || || ||||| || || ||| ||||| | |
|
|
| T |
28430701 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
28430800 |
T |
|
| Q |
206 |
aaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
276 |
Q |
| |
|
|||||||| || |||| | ||||||||||| ||| | || ||| | || | |||||| |||||||||| |
|
|
| T |
28430801 |
gaaggaagctattgaacttcttggagctgactcatttgtggttagcagtgaacaagatcaaatgcaggtat |
28430871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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