View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_low_19 (Length: 247)
Name: NF16821_low_19
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 54389882 - 54390112
Alignment:
| Q |
1 |
agagtgactgcaaaatgaatatgctatacgtaaatcctaaacacaaatagaatttaaatagaaaaagagacaataaataatgtgatgattatattaagag |
100 |
Q |
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| T |
54389882 |
agagtgactgcaaaatgaatatgctatacgtaaatcctaaacacaaatggaatttaaatagaaaaagagacaataaataatgtgatgattatattaagag |
54389981 |
T |
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| Q |
101 |
gtattgaagtgtgccaagaaagtatctgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcctttttggtacaaatgcttaaga |
200 |
Q |
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| T |
54389982 |
gtattgaagtgtgccaagaaagtatctgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcttttttggtacaaatgcttaaga |
54390081 |
T |
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| Q |
201 |
aatatgatattactcaaaaccagaacatagc |
231 |
Q |
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| T |
54390082 |
aatatgatattactcaaaaccagaacatagc |
54390112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 5728606 - 5728542
Alignment:
| Q |
127 |
tgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcctttttggtacaaa |
191 |
Q |
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| T |
5728606 |
tgtatagcatatcaataaattaaattactagtactacgtcataagaccttctttttcggtacaaa |
5728542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 5728987 - 5728938
Alignment:
| Q |
65 |
aagagacaataaataatgtgatgattatattaagaggtattgaagtgtgc |
114 |
Q |
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| T |
5728987 |
aagagacgataaacaatgtgatgattatattaagaggcattgaagtgtgc |
5728938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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