View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_low_3 (Length: 589)
Name: NF16821_low_3
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 7184630 - 7184058
Alignment:
| Q |
1 |
accttgtgctgaaacattattaatcatgtgcgaattgcattaaccatttaaaagttgttgaatttaggtgtcctaaattgatgctcaaataataattttg |
100 |
Q |
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| T |
7184630 |
accttgtgctgaaacattattaatcatgtgcgaattgcattaaccatttaaaagttgttgaatttaggtttcctaaattgatgcccaaataataattttg |
7184531 |
T |
|
| Q |
101 |
tatagtataatcagtaagaatatatgttatcgcaatgatcgtcgttgtcggctgaacatagttgatgtattcttaatgaaatgatgtgttattagctgca |
200 |
Q |
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| T |
7184530 |
tatagtataatcagtaagaatatatgttatcgcaatgatcgtcgttgtcggctgaacatagttgatgtattcttaatgaaatgatgtgttattagctgca |
7184431 |
T |
|
| Q |
201 |
tatttttgttctggctctaaatatttcggttttactgttagatttacattgataatggaggagagttgaatggtattcctcatatacaaactcttagaga |
300 |
Q |
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| T |
7184430 |
tatttttgttctggctctaaatatttcggttttactgttagatttacattgataatggaggagagttgaatggtattcctcatatacaaactcttagaga |
7184331 |
T |
|
| Q |
301 |
atttcctagggaggagctatttggaaaagtcgtcatggttagatttgattctaacatattactcaagcaagagtgtaaccagaagaatcaatcagatttc |
400 |
Q |
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| T |
7184330 |
atttcctagggaggagctatttggaaaagtcgtcatggttagatttgattctaacatattactcaagcaagagtgtaaccagaagaatcaatcagatttc |
7184231 |
T |
|
| Q |
401 |
aatgcactgtttacgattaaatatttacatgaagccggagcaaaggtcatcctggtcagtgattggaaaacaaatacttcagaactttgcaaaaaatcgg |
500 |
Q |
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| T |
7184230 |
aatgcactgtttacgattaaatatttacatgaagccggagcaaaggtcatcctggtcagtgattggaaaacaaatacttcagaacttcgcacaaaatcgg |
7184131 |
T |
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| Q |
501 |
ttgcaggtacattcttaaaggctttcttgaaattaacaagttgtttgagctttcatattaaataagtgaatat |
573 |
Q |
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| T |
7184130 |
ttgcaggtacattcttaaaggctttcttgaaattaacaagttgtttgagctttcatattaaataagtgaatat |
7184058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 10650726 - 10650661
Alignment:
| Q |
40 |
ttaaccatttaaaagttgttgaatttaggtgtcctaaattgatgctcaaataataattttgtatag |
105 |
Q |
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| T |
10650726 |
ttaaccatttaaatgttgtcgaatttaagtgtcaaaaattgatgttcaaataacatttttgaatag |
10650661 |
T |
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