View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16821_low_4 (Length: 580)
Name: NF16821_low_4
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_4 |
 | |
|
| [»] scaffold0223 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
| [»] scaffold0306 (1 HSPs) |
| | |
|
| [»] scaffold0152 (1 HSPs) |
| | |
|
| [»] scaffold0136 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0171 (1 HSPs) |
| | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 562
Target Start/End: Original strand, 21930526 - 21931063
Alignment:
| Q |
12 |
gagatgaatcaagataactgattgtggttgtatgagttatcatgaccttattattaagtcctatgaagcacagatacgaacatcggacacgatacggaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||| |
|
|
| T |
21930526 |
gagatgaatcaagataactgattgtggttgtatgagttatcatgaccttattattaagtcctatgaatcacagatac----at---acacaatatggaca |
21930618 |
T |
|
| Q |
112 |
ctgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgac |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | | ||||| ||||||| ||||||||||||| |||| |||| |||| |||||| |
|
|
| T |
21930619 |
ctgacacgccgactcagctaataatttaaaaaa-ttagataattcattttaattacaagtgtcgatgtcgtgtcagtgttggacacaagacgtgtccgac |
21930717 |
T |
|
| Q |
212 |
accgaaacacgcctaatctgaggagtatccatacttcatagttattaatgnnnnnnnnnnnnn-ctaaacagaatgaatcagatactacacnnnnnnnct |
310 |
Q |
| |
|
||| ||||| ||||||| || ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| || |
|
|
| T |
21930718 |
gccggaacacacctaatccgaagagagtccatgcttcatagttattaatgttttttttctttttctaaacagaatgaatcagatactgcactttttttct |
21930817 |
T |
|
| Q |
311 |
gttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcatttcactacagtgtggtaatagcttctgattaagagatatgaaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21930818 |
gttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcatttcactacagtgtggtaatagcttctgattaagagatatgaaaa |
21930917 |
T |
|
| Q |
411 |
cacacttcaaagaaattaaattattatatagtttgtcttcataaattttatatggttgtgtgtgccaaagttttatgttcattgatgtgtaagtgtatag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21930918 |
cacacttcaaagaaattaaattattatatagtttgtcttcataaattttatatggttgtgtgtgccaaagttttatgttcattgat------gtgtatag |
21931011 |
T |
|
| Q |
511 |
tattgcactaaattgtgtttcaattaaagaatgatagtatgcaggcacattc |
562 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21931012 |
tattgtactaaattgtgtttcaattaaagaatgatagtatgcaggcacattc |
21931063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 24339604 - 24339757
Alignment:
| Q |
84 |
gatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtg |
183 |
Q |
| |
|
|||||| ||| ||||||||| | ||||| |||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
24339604 |
gatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtg |
24339703 |
T |
|
| Q |
184 |
tcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt |
237 |
Q |
| |
|
|| ||| ||| || ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
24339704 |
tcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagt |
24339757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 13770660 - 13770792
Alignment:
| Q |
91 |
acatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtga |
190 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
13770660 |
acatcggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaattacaagtgtcgttgtcgtgtc----- |
13770754 |
T |
|
| Q |
191 |
tggatacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
13770755 |
-ggacacaacacgtgtccgacaccggaacacgcctaatc |
13770792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 27944990 - 27945105
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag |
170 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| |||||||||||||||||||| | |||||||||| ||| |||||||||||| ||||| || |
|
|
| T |
27944990 |
cctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaag |
27945089 |
T |
|
| Q |
171 |
tgtcggtgtcgtgtca |
186 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27945090 |
tgtcggtgtcgtgtca |
27945105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 252
Target Start/End: Complemental strand, 43027580 - 43027404
Alignment:
| Q |
70 |
tcctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattacca |
169 |
Q |
| |
|
||||||||||||| ||| || ||| |||||||| ||||||||||||||| |||| ||||||||||||| | | ||||| |||||| | ||| | |
|
|
| T |
43027580 |
tcctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaaatacaa |
43027481 |
T |
|
| Q |
170 |
gtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
||||||||||||||||| || || |||||| |||||||||| |||||||||||| || |||| ||| | |||||||| |
|
|
| T |
43027480 |
gtgtcggtgtcgtgtca------gacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag |
43027404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 24105629 - 24105694
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| |||||| | | ||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
24105629 |
ctatgaagcacggatacggata-cggacacgacacggacactgacacgccgacacagctaataattt |
24105694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 21864756 - 21864822
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||| ||||| | ||| ||||||||||||| |
|
|
| T |
21864756 |
ctatgaagcacggatacacacatcggacacgacacggacacggacacacggacacagctaataattt |
21864822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 2334278 - 2334364
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt |
237 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||| ||| ||| || |||| | |||||||| |||||||| |||||| ||||||| |
|
|
| T |
2334278 |
ataatttagtgtaattacaagtgtcggtgtcgtgtc-gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagt |
2334364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 11061166 - 11061119
Alignment:
| Q |
91 |
acatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11061166 |
acatcggatacgacacggacactgacacaccgacacagctaataattt |
11061119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 25481861 - 25481961
Alignment:
| Q |
81 |
acagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtc |
180 |
Q |
| |
|
||||| ||| ||||||||||| | | ||||| |||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||| |||||| |
|
|
| T |
25481861 |
acagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtc |
25481960 |
T |
|
| Q |
181 |
g |
181 |
Q |
| |
|
| |
|
|
| T |
25481961 |
g |
25481961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 39698521 - 39698672
Alignment:
| Q |
102 |
gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaaca |
201 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| | | |||||||||||| ||||| |||||| |||||||||| ||| ||| || ||| |
|
|
| T |
39698521 |
gatacggacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgaca |
39698620 |
T |
|
| Q |
202 |
cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagt |
253 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||| | ||||||||| |
|
|
| T |
39698621 |
tgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagt |
39698672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 21522723 - 21522857
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| | ||||||||||||||| ||| ||| |
|
|
| T |
21522723 |
cggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcgga |
21522822 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
|| |||||| |||| ||||| |||||||||||| |
|
|
| T |
21522823 |
cacgacacgtgtccggcaccgggacacgcctaatc |
21522857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 21533289 - 21533423
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| | ||||||||||||||| ||| ||| |
|
|
| T |
21533289 |
cggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcgga |
21533388 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
|| |||||| |||| ||||| |||||||||||| |
|
|
| T |
21533389 |
cacgacacgtgtccggcaccgggacacgcctaatc |
21533423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 22013364 - 22013430
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
22013364 |
ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataattt |
22013430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 6247572 - 6247681
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt |
171 |
Q |
| |
|
||||||| ||| ||| || ||| ||||||||||||| |||||||||||||||| || |||||||||| | | |||||||||||| ||||| ||| |
|
|
| T |
6247572 |
ctatgaaacacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagt |
6247671 |
T |
|
| Q |
172 |
gtcggtgtcg |
181 |
Q |
| |
|
|||||||||| |
|
|
| T |
6247672 |
gtcggtgtcg |
6247681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 19820503 - 19820437
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||| |||||||||||||| ||||| | ||||||||||| |
|
|
| T |
19820503 |
ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataattt |
19820437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 21191142 - 21191056
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||||| | | |||||||||||| ||||| ||||||||||||| |
|
|
| T |
21191142 |
cggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg |
21191056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 21542058 - 21542137
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||| ||| || |||||| |||||||||| ||||||| |||| |
|
|
| T |
21542058 |
ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatc |
21542137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 131824 - 131867
Alignment:
| Q |
209 |
gacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
131824 |
gacaccgaaacatgcctaatctaaggagtgtccatacttcatag |
131867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 15382450 - 15382493
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
15382450 |
cggacacgacacggacaatgacacgccgacacagctaataattt |
15382493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 15410538 - 15410491
Alignment:
| Q |
91 |
acatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
15410538 |
acatcagacacgacacggacactgacacgccgacaccgctaataattt |
15410491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 36642848 - 36642805
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
36642848 |
cggacacgacacggacactgacacgccgacacagttaataattt |
36642805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 14674252 - 14674285
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
14674252 |
acggacactgacacgccgacacagctaataattt |
14674285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 19552626 - 19552586
Alignment:
| Q |
98 |
acacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
19552626 |
acacgacacggacactgacacgccgacacagttaataattt |
19552586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 42893423 - 42893479
Alignment:
| Q |
196 |
acaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
42893423 |
acaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag |
42893479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 16766670 - 16766804
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||||||||||||||| ||| ||| |
|
|
| T |
16766670 |
cggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcgga |
16766769 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
16766770 |
cacaacacgtgtccgacaccgggacacgcctaatc |
16766804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 252
Target Start/End: Complemental strand, 8365629 - 8365448
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag |
170 |
Q |
| |
|
|||||||||||| |||||| ||| | ||||||| |||||||||||||||||||| || |||||||||| | | ||||||| |||| ||||| || |
|
|
| T |
8365629 |
cctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaag |
8365530 |
T |
|
| Q |
171 |
tgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
||||||||||||||| || ||| || |||||| |||||||| | |||||||||||| ||||||| ||| | |||||||| |
|
|
| T |
8365529 |
tgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag |
8365448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 12696277 - 12696387
Alignment:
| Q |
74 |
atgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgt |
173 |
Q |
| |
|
||||||||| |||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
12696277 |
atgaagcacggatacggaca-cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgt |
12696375 |
T |
|
| Q |
174 |
cggtgtcgtgtc |
185 |
Q |
| |
|
| |||||||||| |
|
|
| T |
12696376 |
cagtgtcgtgtc |
12696387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 9107456 - 9107314
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||||| | | | |||||||||| ||||| ||||||||||||||||| ||| ||| |
|
|
| T |
9107456 |
cggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcgga |
9107357 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagt |
237 |
Q |
| |
|
||||| || |||||||||| |||| ||||||| ||||||| |
|
|
| T |
9107356 |
cacaacgtgtgtccgacaccgggacacacctaatccgaggagt |
9107314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 3398569 - 3398635
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||| |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3398569 |
ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataattt |
3398635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 6898392 - 6898281
Alignment:
| Q |
70 |
tcctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattacca |
169 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||| |||||||||||||| ||| | |||||||||| ||| |||||| ||||| ||||| | |
|
|
| T |
6898392 |
tcctatgaagcacaaacacgaacaacggacacgatatggacactgacacgctgacacgtctaataatttgaacaaattacataattaagtgtaattacaa |
6898293 |
T |
|
| Q |
170 |
gtgtcggtgtcg |
181 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6898292 |
gtgtcggtgtcg |
6898281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 9522919 - 9522998
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||| ||| |||| | |||||| ||||||||||| |||||||||||| |
|
|
| T |
9522919 |
ataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcctaatc |
9522998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 7977915 - 7977830
Alignment:
| Q |
96 |
ggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
|||||||| | ||| |||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
7977915 |
ggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcg |
7977830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 10770760 - 10770668
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcag |
187 |
Q |
| |
|
||||||||| | ||||||||||||||| || || |||||||||| | | |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
10770760 |
cggacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcag |
10770668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 31384948 - 31385048
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca |
249 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||| |||| |||| || |||||| ||| |||||| |||||||||||| |||||| ||| | ||||| |
|
|
| T |
31384948 |
ataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttca |
31385046 |
T |
|
| Q |
250 |
ta |
251 |
Q |
| |
|
|| |
|
|
| T |
31385047 |
ta |
31385048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 426600 - 426557
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
426600 |
cggacacgacacggacactgacacgccgacacagttaataattt |
426557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 853969 - 853902
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||| ||| |||||| ||| ||||||||| ||||| ||||||||||||| || |||||||||| |
|
|
| T |
853969 |
cctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataattt |
853902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 7938089 - 7938132
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||||||||| |
|
|
| T |
7938089 |
cggacacgacatggacactgacacgccgacacagctaataattt |
7938132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 8777059 - 8777016
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
8777059 |
cggacacgacacggacactgacacgccgacacaactaataattt |
8777016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 9027151 - 9027194
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
9027151 |
cggacacgacacggacactgacacgccgacaccgctaataattt |
9027194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 9658854 - 9658895
Alignment:
| Q |
97 |
gacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
9658854 |
gacacgacacggacactgacacgccgacaccgctaataattt |
9658895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 17841665 - 17841632
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
17841665 |
acggacactgacacgccgacacagctaataattt |
17841632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 31959111 - 31959175
Alignment:
| Q |
73 |
tatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||| |||||| ||| |||||| || ||| |||||||||||||| | ||||||||||||| |
|
|
| T |
31959111 |
tatgaagcacggatacggaca-cggacatgacacgaacactgacacgccgtcacagctaataattt |
31959175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 2153996 - 2153944
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgac |
124 |
Q |
| |
|
|||||||||||| | ||| |||||||||| || |||||||| ||||||||||| |
|
|
| T |
2153996 |
ctatgaagcacaaacacggacatcggacatgacacggacaccgacacgccgac |
2153944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 9911559 - 9911523
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtca |
186 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
9911559 |
ataattcagtgtaattacaagtgtcggtgtcgtgtca |
9911523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 20121 - 20235
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag |
170 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||| | | |||||||||||| ||||| || |
|
|
| T |
20121 |
cctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaag |
20220 |
T |
|
| Q |
171 |
tgtcggtgtcgtgtc |
185 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
20221 |
tgtcagtgtcgtgtc |
20235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 109 - 250
Target Start/End: Complemental strand, 4987363 - 4987222
Alignment:
| Q |
109 |
acactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatcc |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||| |||| |||||| ||| |||| || |||||| ||| |
|
|
| T |
4987363 |
acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtcc |
4987264 |
T |
|
| Q |
209 |
gacaccgaaacacgcctaatctgaggagtatccatacttcat |
250 |
Q |
| |
|
||||||| |||||||||||| ||||||| ||| |||||||| |
|
|
| T |
4987263 |
gacaccgggacacgcctaatccgaggagtgtccgtacttcat |
4987222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 15796380 - 15796246
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||| ||||||||| | | |||||||||||| ||||| | |||||||||||||| ||| ||| |
|
|
| T |
15796380 |
cggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcgga |
15796281 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
15796280 |
cacaacacgtgtccaacaccggaacacgcctaatc |
15796246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 252
Target Start/End: Original strand, 55401025 - 55401194
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt |
171 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||| ||||||||||| |||||||| || |||||||||| | | |||||| ||||| ||||| ||| |
|
|
| T |
55401025 |
ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagt |
55401124 |
T |
|
| Q |
172 |
gtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
||||||||| ||| || |||||| ||||||||||| |||||||||||| ||||||| ||| | |||||||| |
|
|
| T |
55401125 |
gtcggtgtc-----------ggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag |
55401194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 8587129 - 8587021
Alignment:
| Q |
73 |
tatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtg |
172 |
Q |
| |
|
||||||||||||||||| ||| |||||| || |||||||||||||||||||| || ||| |||||| | | |||||| ||||| ||||| |||| |
|
|
| T |
8587129 |
tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaattacaagtg |
8587030 |
T |
|
| Q |
173 |
tcggtgtcg |
181 |
Q |
| |
|
||||||||| |
|
|
| T |
8587029 |
tcggtgtcg |
8587021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 10335372 - 10335329
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
10335372 |
cggacacgacacggacactgacacgccgacacaactaataattt |
10335329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 26492291 - 26492248
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
26492291 |
cggacacgacacggacactgacacgccgacagagctaataattt |
26492248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 24205142 - 24205084
Alignment:
| Q |
80 |
cacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||| ||| ||| ||||||||| |||||||||||||||||||| | | ||||||||| |
|
|
| T |
24205142 |
cacagacacggacaccggacacgacacggacactgacacgccgacacggataataattt |
24205084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 3865632 - 3865599
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
3865632 |
acggacactgacacgccgacacagctaataattt |
3865599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 10318110 - 10318077
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
10318110 |
acggacactgacacgccgacacagctaataattt |
10318077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 25192457 - 25192390
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25192457 |
cctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataattt |
25192390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 22651949 - 22652106
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| | | |||||||| | | ||||| ||||||||||||||||| ||| ||| |
|
|
| T |
22651949 |
cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcgga |
22652048 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|| ||| || |||||||||| ||||| |||||| ||||||| ||| | |||||||| |
|
|
| T |
22652049 |
cacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag |
22652106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 29510390 - 29510233
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| | | | |||||||| | ||||| ||||||||||| ||||| ||| ||| |
|
|
| T |
29510390 |
cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgtagtgtcggtgtcgga |
29510291 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|| || ||| |||||||||| |||| ||||||| ||||||| ||| | |||||||| |
|
|
| T |
29510290 |
cacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag |
29510233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 15816208 - 15816058
Alignment:
| Q |
102 |
gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaaca |
201 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| | | |||||| ||||| |||| |||||||||||||||| ||| ||| || ||| |
|
|
| T |
15816208 |
gatacggacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgaca |
15816109 |
T |
|
| Q |
202 |
cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||| ||| ||| | |||||||| |
|
|
| T |
15816108 |
cgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag |
15816058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 41838233 - 41838166
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||| ||||||| |||||| |||| ||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
41838233 |
cctaagaagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataattt |
41838166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 29655996 - 29655927
Alignment:
| Q |
163 |
attaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctga |
232 |
Q |
| |
|
||||| ||||| || |||||||||||| ||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
29655996 |
attacaagtgtaggcgtcgtgtcagtgtcggacacaacacatatctgacaccgaaacacgcctaatctga |
29655927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 126457 - 126392
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||||||| ||||||||||| || | ||||||||||| |
|
|
| T |
126457 |
ctatgaagcacggatacgcaca-cggacacgatacggatactgacacgccaacaccgctaataattt |
126392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 4673522 - 4673468
Alignment:
| Q |
84 |
gatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||||||||||| ||| ||||||||| |
|
|
| T |
4673522 |
gatacggacatcggacacgacacagacactgacacgccgacacagataataattt |
4673468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 13437073 - 13437007
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| || | | ||| |||||| || | |||||||||||||||||| ||||||||||||| |
|
|
| T |
13437073 |
ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataattt |
13437007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 28642358 - 28642404
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacac |
118 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
28642358 |
ctatgaagcacggatacggacatcggacacgacacggacaatgacac |
28642404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 24669406 - 24669492
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
||||||||| || ||||||||||||| ||| | | ||||||||| ||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
24669406 |
cggacacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaattacaagtgtcggtgtcg |
24669492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 4498368 - 4498424
Alignment:
| Q |
198 |
aacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtt |
254 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||| ||| | |||| ||||| |
|
|
| T |
4498368 |
aacatgtatccgacaccgaaacacacctaatcagaggagtgtccgtgcttcttagtt |
4498424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 5813572 - 5813608
Alignment:
| Q |
102 |
gatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5813572 |
gatacggacacggacacgccgacacagctaataattt |
5813608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 22204619 - 22204655
Alignment:
| Q |
102 |
gatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |
|
|
| T |
22204619 |
gatacggacactgacacgccgacacaactaataattt |
22204655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 31694741 - 31694639
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca |
249 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| ||| ||| ||||||| ||| |||||||| ||||||||||||||||||||| ||| | ||||| |
|
|
| T |
31694741 |
ataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttca |
31694642 |
T |
|
| Q |
250 |
tag |
252 |
Q |
| |
|
||| |
|
|
| T |
31694641 |
tag |
31694639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 5944231 - 5944398
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnn--ttagataattcagtgtgattacca |
169 |
Q |
| |
|
||||||| |||||| | | ||||||||||||| || ||||||||||||||| | ||||||||||||| | | |||||||||||| |||| | |
|
|
| T |
5944231 |
ctatgaaacacagacaaggacatcggacacgacacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattataa |
5944330 |
T |
|
| Q |
170 |
gtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt |
237 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||| | |||||||||| | |||||||||| ||||||| |
|
|
| T |
5944331 |
gtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagt |
5944398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 6612265 - 6612167
Alignment:
| Q |
87 |
acgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtc |
185 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||| ||| ||||||||| ||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
6612265 |
acgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc |
6612167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 40917724 - 40917879
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||||||||| | | | ||| ||||| ||||| ||| ||||||||||||| ||| |||| |
|
|
| T |
40917724 |
cggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcaca--attaagtgtaattacaagtctcggtgtcgtgtcggtgttgga |
40917821 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||| ||||| | ||| | |||||||| |
|
|
| T |
40917822 |
cacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag |
40917879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 43168886 - 43168837
Alignment:
| Q |
11 |
tgagatgaatcaagataactgattgtggttgtatgagttatcatgacctta |
61 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
43168886 |
tgagatgaatcaagata-ctgattgtggttgtatgagttatcattacctta |
43168837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 47989525 - 47989629
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca |
249 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||| ||| || |||| | || |||| || |||||||||||| ||||||| ||| | ||||| |
|
|
| T |
47989525 |
ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttca |
47989624 |
T |
|
| Q |
250 |
tagtt |
254 |
Q |
| |
|
||||| |
|
|
| T |
47989625 |
tagtt |
47989629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 43168754 - 43168665
Alignment:
| Q |
309 |
ctgttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcatttcactacagtgtggtaatagcttctgattaagag |
401 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||| |||||||| ||||| || ||| | |||||||||||||||| |||||||||||| |
|
|
| T |
43168754 |
ctgttcacttagtgaagc---accactagctgttgtgagagattgtatttgtttccacttctcgacagtgtggtaatagcctctgattaagag |
43168665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 48040559 - 48040505
Alignment:
| Q |
84 |
gatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
48040559 |
gatacggacaccggacacgacacggacactgacacgccgacacagataataattt |
48040505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 22515880 - 22515824
Alignment:
| Q |
199 |
acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtta |
255 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||| ||| | ||||||||||| |
|
|
| T |
22515880 |
acacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagtta |
22515824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 398851 - 398808
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
398851 |
cggacacgacacggacactgacacgccgacaccgctaataattt |
398808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 46348459 - 46348383
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | | |||||| ||||| ||||| ||||||||||||| |
|
|
| T |
46348459 |
acggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg |
46348383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 48450673 - 48450630
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
48450673 |
cggacacgacacggacactgacacgccaacacagctaataattt |
48450630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 5927449 - 5927383
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||| |||||| |||||| ||| ||||||||| |||||||||||||||| || | ||||||||||| |
|
|
| T |
5927449 |
ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataattt |
5927383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 16297373 - 16297328
Alignment:
| Q |
91 |
acatcggacacgatacggacactgacacgccgactcagctaataat |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| |||| |||||| |
|
|
| T |
16297373 |
acatcggacacgatacggatactgacacgtcgacacagcaaataat |
16297328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 18471361 - 18471414
Alignment:
| Q |
199 |
acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|||||| |||||||||||||||| |||||| ||||||| ||| |||||||||| |
|
|
| T |
18471361 |
acacgtgtccgacaccgaaacacacctaattcgaggagtgtccgtacttcatag |
18471414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 18556532 - 18556499
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
18556532 |
acggacactgacacgccgacacagctaataattt |
18556499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 21366041 - 21365992
Alignment:
| Q |
203 |
gtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| ||| | |||||||| |
|
|
| T |
21366041 |
gtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag |
21365992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 51410091 - 51410144
Alignment:
| Q |
199 |
acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| | | |||||||| |
|
|
| T |
51410091 |
acacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag |
51410144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 241567 - 241724
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| | | |||||| ||||| |||| |||||||||||||||| ||| ||| |
|
|
| T |
241567 |
cggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcgga |
241666 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||| ||| ||| ||| | |||||||| |
|
|
| T |
241667 |
cacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag |
241724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 35056896 - 35056998
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca |
249 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| ||| ||| || |||||| |||||||| ||||||||||||||||||||||| ||| | ||||| |
|
|
| T |
35056896 |
ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttca |
35056995 |
T |
|
| Q |
250 |
tag |
252 |
Q |
| |
|
||| |
|
|
| T |
35056996 |
tag |
35056998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 87 - 229
Target Start/End: Complemental strand, 36756438 - 36756296
Alignment:
| Q |
87 |
acgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtca |
186 |
Q |
| |
|
|||||||||||| |||| || |||||||||||| |||| || |||||||||| | | |||||||||||| |||| |||||||||||||||| | |
|
|
| T |
36756438 |
acgaacatcggatacgacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgtta |
36756339 |
T |
|
| Q |
187 |
gtgatggatacaacacgtatccgacaccgaaacacgcctaatc |
229 |
Q |
| |
|
||| | | ||||||| | |||||||||| ||||||||||||| |
|
|
| T |
36756338 |
gtgtcgaacacaacacatgtccgacaccgcaacacgcctaatc |
36756296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 20539784 - 20539672
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag |
170 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||| ||||||||||||||| |||| ||||||||||||| | | |||||| ||||| ||||| || |
|
|
| T |
20539784 |
cctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaag |
20539685 |
T |
|
| Q |
171 |
tgtcggtgtcgtg |
183 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20539684 |
tgtcggtgtcgtg |
20539672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 19536507 - 19536441
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| || |||||||||| |
|
|
| T |
19536507 |
ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataattt |
19536441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 15657837 - 15657992
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |||||||||| | | |||||||||||| ||||| | |||||||||||||| || ||| |
|
|
| T |
15657837 |
cggacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcgga |
15657936 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcat |
250 |
Q |
| |
|
| |||||| |||||| ||| ||||||||| || ||||||| ||||| |||||| |
|
|
| T |
15657937 |
cgcgacacgtgtccgacgccgggacacgcctagtccgaggagtgtccatgcttcat |
15657992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 6940205 - 6940310
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt |
171 |
Q |
| |
|
||||||| ||| |||||| ||||| | |||| |||||||||||||||||||| ||||||||||||| ||| |||||| ||||| ||||| ||| |
|
|
| T |
6940205 |
ctatgaaacacggatacggacatcaaatacgacacggacactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaattacaagt |
6940304 |
T |
|
| Q |
172 |
gtcggt |
177 |
Q |
| |
|
|||||| |
|
|
| T |
6940305 |
gtcggt |
6940310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 21624217 - 21624326
Alignment:
| Q |
73 |
tatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttag-ataattcagtgtgattaccagt |
171 |
Q |
| |
|
|||||||| | |||||| ||| || |||||| || ||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||| |
|
|
| T |
21624217 |
tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattacaagt |
21624316 |
T |
|
| Q |
172 |
gtcggtgtcg |
181 |
Q |
| |
|
|||||||||| |
|
|
| T |
21624317 |
gtcggtgtcg |
21624326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 12668454 - 12668352
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca |
249 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| || ||||||| ||||||||| |||| | |||| |||||| ||||||||||| | ||||| |
|
|
| T |
12668454 |
ataattcagtgtaattataagtgtcggtgtcgtgtcggtattggatacgacacgtatctgacattgggacacacctaattcgaggagtatccgtgcttca |
12668355 |
T |
|
| Q |
250 |
tag |
252 |
Q |
| |
|
||| |
|
|
| T |
12668354 |
tag |
12668352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 21091672 - 21091739
Alignment:
| Q |
70 |
tcctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| | |||||||||||||| ||||| | ||||||||||| |
|
|
| T |
21091672 |
tcctatgaagcacggatacaaaca-cggacacaagacggacactgacacaccgacaccgctaataattt |
21091739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 21374809 - 21374706
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacac--gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattacca |
169 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| || ||||||||| |||||||||| ||||||||||||| ||| |||||||||||| ||||| | |
|
|
| T |
21374809 |
ctatgaagcacggatacggaca-cggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaa |
21374711 |
T |
|
| Q |
170 |
gtgtc |
174 |
Q |
| |
|
||||| |
|
|
| T |
21374710 |
gtgtc |
21374706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 37419773 - 37419873
Alignment:
| Q |
152 |
aattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcata |
251 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||| ||| ||| || | ||| |||||||||| |||||||||||| ||||||| ||| | ||||||| |
|
|
| T |
37419773 |
aattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata |
37419872 |
T |
|
| Q |
252 |
g |
252 |
Q |
| |
|
| |
|
|
| T |
37419873 |
g |
37419873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 37558960 - 37559036
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | | |||||||| ||| ||||| ||||||||||||| |
|
|
| T |
37558960 |
acggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtcg |
37559036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 29176418 - 29176368
Alignment:
| Q |
202 |
cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| | ||| |||||||| |
|
|
| T |
29176418 |
cgtatccgacaccgaaacacgcctaatccgagaagtgttcatgcttcatag |
29176368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 24894372 - 24894405
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
24894372 |
acggacactgacacgccgacacagctaataattt |
24894405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 28524454 - 28524547
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccat |
243 |
Q |
| |
|
|||||||||||| |||| |||||| ||| |||| ||| ||| ||||||||| || ||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
28524454 |
ataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacacagaaacacgcctaatctgagaagtgtccat |
28524547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 18841099 - 18841014
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtc |
180 |
Q |
| |
|
||||||||| | |||||||||||||| ||| || |||||||||| ||| |||||| ||||| ||||| |||||||||||| |
|
|
| T |
18841099 |
cggacacgacatggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtc |
18841014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataat |
136 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||| |||| |||||||| ||||| | ||||||||| |
|
|
| T |
33519736 |
ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat |
33519800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
| Q |
208 |
cgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| | |||||||| |
|
|
| T |
44635568 |
cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag |
44635612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 11651244 - 11651177
Alignment:
| Q |
71 |
cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||| ||||||| |||||| |||| ||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
11651244 |
cctaagaagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataattt |
11651177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 28084475 - 28084537
Alignment:
| Q |
76 |
gaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||| ||| ||||||||| || ||| ||||||||||||| ||||||| ||||| |
|
|
| T |
28084475 |
gaagcacagatacggacaccggacacgacacagacgctgacacgccgacacagctaagaattt |
28084537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 15724563 - 15724498
Alignment:
| Q |
172 |
gtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt |
237 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||| || |||||| |||||||||||||| ||||||| |
|
|
| T |
15724563 |
gtcggtgtcgtgtcggtgtcggacacaacacgtgtcagacaccaaaacacgcctaatccgaggagt |
15724498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 23293072 - 23292986
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||||||| | | |||||||||| | ||||| ||||||||||||| |
|
|
| T |
23293072 |
cggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg |
23292986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 19312366 - 19312446
Alignment:
| Q |
153 |
attcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgag |
233 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||| || |||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
19312366 |
attcagtgtaattataagtatcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgag |
19312446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 16303351 - 16303263
Alignment:
| Q |
96 |
ggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||| | | |||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
16303351 |
ggacacgatacggacactgacacgccgacaaagataatattttgaaaaaatgatataatttagtgtaattacaagtgtcggtgtcgtgt |
16303263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 12047385 - 12047339
Alignment:
| Q |
206 |
tccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
12047385 |
tccgacaccaaaacacgcctaatccgaggagcatccatgcttcatag |
12047339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 30298929 - 30299008
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt-nnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtg |
183 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
30298929 |
acggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtg |
30299008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 30327797 - 30327876
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt-nnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtg |
183 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | | |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
30327797 |
acggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtg |
30327876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 40481588 - 40481653
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||| || |||||||||||||||| || |||||||||| |
|
|
| T |
40481588 |
ctatgaatcacaaatacgaaca-cggacacgacactgacactgacacgccgatacaactaataattt |
40481653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 20633460 - 20633501
Alignment:
| Q |
97 |
gacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||||| |
|
|
| T |
20633460 |
gacacgatacggacactgacacgtcgacaccgctaataattt |
20633501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 27706208 - 27706123
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgagga |
235 |
Q |
| |
|
|||||| ||||| ||||| ||||| ||||||||| | || ||| || |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
27706208 |
ataatttagtgtaattacaagtgtgagtgtcgtgttaatgtcggacacgacacgtatccgataccgggacacgcctaatctgagga |
27706123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 28000773 - 28000672
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtc-agtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttc |
248 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||| |||| || || |||||| || |||||||| |||| |||||||||| |||| ||| | |||| |
|
|
| T |
28000773 |
ataattcagtgtaattacaagtgtcggtgtcatgtcaagtgttgttcacgacacgtgtctgacaccgagacacacctaatctgatgagtgtccgtgcttc |
28000674 |
T |
|
| Q |
249 |
at |
250 |
Q |
| |
|
|| |
|
|
| T |
28000673 |
at |
28000672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 28964241 - 28964185
Alignment:
| Q |
199 |
acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtta |
255 |
Q |
| |
|
|||| |||||||||| | |||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
28964241 |
acacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatagtta |
28964185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 34306797 - 34306761
Alignment:
| Q |
199 |
acacgtatccgacaccgaaacacgcctaatctgagga |
235 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
34306797 |
acacgtgtccgacaccgagacacgcctaatctgagga |
34306761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 8771 - 8917
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| | | || ||| ||||| ||||| |||||||||||| ||| |
|
|
| T |
8771 |
cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtc-----------gga |
8859 |
T |
|
| Q |
195 |
tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag |
252 |
Q |
| |
|
|| |||||| ||||||||||| |||||||||||||||||||| ||| | |||||||| |
|
|
| T |
8860 |
cacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag |
8917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 13350 - 13416
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| |||||| ||| |||| | || |||||||||||||||||||| || |||||||||| |
|
|
| T |
13350 |
ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataattt |
13416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 21977 - 21911
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||||| |||||| ||| |||| | || |||||||||||||||||||| || |||||||||| |
|
|
| T |
21977 |
ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataattt |
21911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 3880 - 3778
Alignment:
| Q |
150 |
ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca |
249 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||| ||| ||| || |||| | ||||||| ||| |||||||||||| ||||||| ||| | ||||| |
|
|
| T |
3880 |
ataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttca |
3781 |
T |
|
| Q |
250 |
tag |
252 |
Q |
| |
|
||| |
|
|
| T |
3780 |
tag |
3778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 225369 - 225311
Alignment:
| Q |
80 |
cacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||| ||| ||| ||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
225369 |
cacagacacggacaccggacacgacacggacactgacacgccgacacagataataattt |
225311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 46651 - 46741
Alignment:
| Q |
91 |
acatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg |
181 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| ||| ||||||||| | | |||||||||||| ||||| | ||||||||||| |
|
|
| T |
46651 |
acatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtcg |
46741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 23371 - 23483
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt |
171 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||| || ||||||||||||||||| ||| |||||| | | | |||||||||||| |||| ||| |
|
|
| T |
23371 |
ctatgaagcacggatacggaca-cggacacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaattataagt |
23469 |
T |
|
| Q |
172 |
gtcggtgtcgtgtc |
185 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23470 |
gtcggtgtcgtgtc |
23483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 178905 - 178862
Alignment:
| Q |
95 |
cggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
178905 |
cggacacgacacggacactgacacgccgacacaactaataattt |
178862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 192333 - 192292
Alignment:
| Q |
97 |
gacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
192333 |
gacacgatacggacactgacacgccgacaccgttaataattt |
192292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 92787 - 92859
Alignment:
| Q |
102 |
gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtc |
174 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||| |||||||||||| ||||| |||||| |
|
|
| T |
92787 |
gatacggacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgtc |
92859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 19527 - 19592
Alignment:
| Q |
72 |
ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||| || |||||||||||||||| || |||||||||| |
|
|
| T |
19527 |
ctatgaatcacaaatacgaaca-cggacacgacactgacactgacacgccgatacaactaataattt |
19592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 51794 - 51827
Alignment:
| Q |
105 |
acggacactgacacgccgactcagctaataattt |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
51794 |
acggacactgacacgccgacacagctaataattt |
51827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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