View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16821_low_6 (Length: 552)

Name: NF16821_low_6
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16821_low_6
NF16821_low_6
[»] chr2 (3 HSPs)
chr2 (15-290)||(37489156-37489436)
chr2 (349-533)||(37489434-37489618)
chr2 (56-108)||(15915585-15915637)
[»] chr5 (3 HSPs)
chr5 (56-323)||(32716612-32716881)
chr5 (362-412)||(32716524-32716575)
chr5 (499-533)||(32716444-32716478)
[»] chr7 (4 HSPs)
chr7 (56-175)||(33781623-33781742)
chr7 (262-372)||(46887334-46887445)
chr7 (47-102)||(30401451-30401506)
chr7 (474-533)||(46886442-46886501)
[»] chr1 (2 HSPs)
chr1 (56-164)||(35996164-35996272)
chr1 (66-162)||(25446992-25447088)
[»] chr4 (2 HSPs)
chr4 (47-144)||(13921848-13921945)
chr4 (47-127)||(13922519-13922599)
[»] chr3 (2 HSPs)
chr3 (63-127)||(50362907-50362971)
chr3 (120-163)||(10703382-10703425)
[»] scaffold2136 (1 HSPs)
scaffold2136 (56-144)||(595-683)
[»] chr8 (3 HSPs)
chr8 (47-129)||(19475119-19475201)
chr8 (47-129)||(19546044-19546126)
chr8 (47-129)||(19586570-19586652)
[»] chr6 (2 HSPs)
chr6 (47-141)||(15882165-15882259)
chr6 (66-127)||(15882826-15882887)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 37489156 - 37489436
Alignment:
Q  15 aatatacattaaaagg-----agtcagatactttgtaaccagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggc 109  Q
    ||||||||||||||||     |||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37489156 aatatacattaaaaggttaaaagtcagatcctttgtaaccaagtgcaagtctaataacttacaccaaatcttaagcattaaattaacttaatccaatggc 37489255  T
Q  110 ttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489256 ttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattg 37489355  T
Q  210 ctttcgatttcaatgcttatatttcatcgacgagtagagatcaaagtgatgtttctccattgattgcagaccttacttttg 290  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489356 ctttcgatttcaatgcgtatatttcatcgacgagtagagatcaaagtgatgtttctccattgattgcagaccttacttttg 37489436  T

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Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 349 - 533
Target Start/End: Original strand, 37489434 - 37489618
Alignment:
Q  349 ttgagaagattaataaattaaaattaacgtaaattggaatataaaattgaagctttcaattaagaccaatgataaccataaatagcaaacacccaatttg 448  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489434 ttgagaagattaataaattaaaattaacgtgaattagaatataaaattgaagctttcaattaagaccaatgataaccataaatagcaaacacccaatttg 37489533  T
Q  449 ggtgacccaaatttacaatacccatacatggttttcgattaagaaattgaaattacttttgattaatgaaactggaatcaatacc 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37489534 ggtgacccaaatttacaatacccatacatggttttcgattaagaaattgaaattacttttgattaatgaaactggaatcaatacc 37489618  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15915585 - 15915637
Alignment:
Q  56 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatgg 108  Q
    ||||||||||||||||| ||||| |||| | ||||||||| |||||| |||||    
T  15915585 aagtctaataacttacatcaaattttaatcgttaaattaaattaatctaatgg 15915637  T

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Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 56 - 323
Target Start/End: Complemental strand, 32716881 - 32716612
Alignment:
Q  56 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 155  Q
    |||| |||| |||||||||||||||||| | | |||||||||||||||||||||||||||  |||||||||||||||||| || ||||||| | ||||||    
T  32716881 aagtataatgacttacaccaaatcttaaccgtaaaattaacttaatccaatggcttccataaatcaaattaaaaggaatctaatgtgagacacgtacaat 32716782  T
Q  156 tccctctcccttctcttgtcccaacatttgcttgaagtcattctttctaaattgctttcgatttcaatgcttata--tttcatcgacgagtagagatcaa 253  Q
    ||||| || ||| |||||||||||| | |||||||| ||||||||||||||||||||  |||||   ||| ||||  | |||||||   || ||||||||    
T  32716781 tccctttctcttttcttgtcccaacgtctgcttgaaatcattctttctaaattgcttcagatttatttgcatatatctctcatcgatctgttgagatcaa 32716682  T
Q  254 agtgatgtttctccattgattgcagaccttacttttgcaagaacagaaaacagccaaaacggtgggtgga 323  Q
    |||| || ||||||||||||||    |||| |||||||||||||| |||||||||||| |||||||||||    
T  32716681 agtggtgcttctccattgattgtgcgccttgcttttgcaagaacacaaaacagccaaagcggtgggtgga 32716612  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 32716575 - 32716524
Alignment:
Q  362 taaattaaaattaacgtaaattggaatataaaa-ttgaagctttcaattaag 412  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  32716575 taaattaaaataaacgtgaattgaaatataaaaattgaagctttcaattaag 32716524  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 533
Target Start/End: Complemental strand, 32716478 - 32716444
Alignment:
Q  499 aattacttttgattaatgaaactggaatcaatacc 533  Q
    ||||||||||||||||||||| |||||||||||||    
T  32716478 aattacttttgattaatgaaattggaatcaatacc 32716444  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 33781623 - 33781742
Alignment:
Q  56 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 155  Q
    ||||||||| |||||||||||||||||  | | || || |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||    
T  33781623 aagtctaatgacttacaccaaatcttatccgtcaattttacttaatccaatggcttccatctatcaaattaaaagaagtcaaaagtgagacacatacgat 33781722  T
Q  156 tccctctcccttctcttgtc 175  Q
    ||||||||||||||||||||    
T  33781723 tccctctcccttctcttgtc 33781742  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 372
Target Start/End: Complemental strand, 46887445 - 46887334
Alignment:
Q  262 ttctccattgattgcaga-ccttacttttgcaagaacagaaaacagccaaaacggtgggtgga-caaacaaaaataaagggacttacaattgagaagatt 359  Q
    |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| |||||||||||  ||||| || | || |||||| ||||||||||||||    
T  46887445 ttctccattgattg-agagccttacttttgcaagaacgggaaacaaccaaaccggtgggtggatgaaacataattgaaaggacttgcaattgagaagatt 46887347  T
Q  360 aataaattaaaat 372  Q
    ||| |||||||||    
T  46887346 aatgaattaaaat 46887334  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 30401506 - 30401451
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatc 102  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||||||    
T  30401506 accagatgcaagtctaataaattacaccaaatctcaaccattaaactaaattaatc 30401451  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 46886501 - 46886442
Alignment:
Q  474 acatggttttcgattaagaaattgaaattacttttgattaatgaaactggaatcaatacc 533  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| || || ||||||||||    
T  46886501 acatggttttcaattaagaaattaaaatcacttttgattaatgtaattgaaatcaatacc 46886442  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 35996164 - 35996272
Alignment:
Q  56 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaat 155  Q
    |||||||| ||| ||||||||||||||  |||||||||||  |||||||| | |||  || |  ||||||||||||||||||||||||||| ||| ||||    
T  35996164 aagtctaacaacctacaccaaatcttagccattaaattaaactaatccaacgacttatatttgacaaattaaaaggaatcaaaagtgagacacatgcaat 35996263  T
Q  156 tccctctcc 164  Q
    |||||||||    
T  35996264 tccctctcc 35996272  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 25447088 - 25446992
Alignment:
Q  66 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgagacgcatacaattccctct 162  Q
    ||||||||||||||| || || |||||||| |||||| ||||||| | || |||||||||||||   ||| |||||||||| ||||||||| |||||    
T  25447088 acttacaccaaatctcaaccactaaattaaattaatctaatggctcctatttatcaaattaaaaaacatctaaagtgagacacatacaatttcctct 25446992  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 13921848 - 13921945
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 144  Q
    |||||||| ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | |||||||||| | || ||||||||||    
T  13921848 accagatgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaaggaaaccaaaagtgag 13921945  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 13922599 - 13922519
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 127  Q
    |||||||  ||||||||| ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  13922599 accagatctaagtctaatgacttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 13922519  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 50362971 - 50362907
Alignment:
Q  63 ataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 127  Q
    |||||||| ||||||||| || ||||||||||| ||||| ||||||||| ||| |||||||||||    
T  50362971 ataacttataccaaatctcaaccattaaattaaattaattcaatggctttcatatatcaaattaa 50362907  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 10703425 - 10703382
Alignment:
Q  120 caaattaaaaggaatcaaaagtgagacgcatacaattccctctc 163  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  10703425 caaattaaaagaaatcaaaagcgagacacatacaattccctctc 10703382  T

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Target: scaffold2136 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2136
Description:

Target: scaffold2136; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 683 - 595
Alignment:
Q  56 aagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagtgag 144  Q
    ||||||||||||||||||||||||||||   ||||||||| |||||| ||| | | || |  ||||||||||| | || ||||||||||    
T  683 aagtctaataacttacaccaaatcttaactgttaaattaaattaatctaatagatcccctacatcaaattaaaggaaaccaaaagtgag 595  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 19475201 - 19475119
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 129  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19475201 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19475119  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 19546126 - 19546044
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 129  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19546126 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19546044  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 19586570 - 19586652
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaa 129  Q
    ||||| || ||||||||| |||| |||||||||| |  | ||||||||| |||||  ||||||||||||||  ||||||||||    
T  19586570 accaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaattaatgtaatggcttccatcttccaaattaaaa 19586652  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 15882165 - 15882259
Alignment:
Q  47 accagatgcaagtctaataacttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaaaaggaatcaaaagt 141  Q
    ||||| || ||||||||| || |||||||||||| || |||||| |||| |||||| |||||||  ||| | ||||||||||   ||||||||||    
T  15882165 accaggtgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatggctctcatatgtcaaattaaagaaaatcaaaagt 15882259  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 15882887 - 15882826
Alignment:
Q  66 acttacaccaaatcttaaacattaaattaacttaatccaatggcttccatctatcaaattaa 127  Q
    ||||||||||||||| || |||||| |||| |||||| |||||||  ||| |||||||||||    
T  15882887 acttacaccaaatctcaaccattaatttaaattaatctaatggctctcatatatcaaattaa 15882826  T

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