View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_low_8 (Length: 401)
Name: NF16821_low_8
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 41382978 - 41383358
Alignment:
| Q |
1 |
aaatggggcgacgaaatcggagaataggactatgagaacgacatttatcaagcaaaacggatacaaagattgtggacacatttgcaagtttgcaatggat |
100 |
Q |
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| T |
41382978 |
aaatggggcgacgaaattggagaataggactatgagaacgacatttatcaagcaaaacggatacaaagattgtggacacatttgcaagtttgcaatggat |
41383077 |
T |
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| Q |
101 |
aagtatctttcaaattcaataggcccccacaatgctcacaatttgcatttatgctttatgctttatactgccttacccatggattcccacgaattgcaat |
200 |
Q |
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| T |
41383078 |
aagtatctttcaaattcaataggcccccacaatgctcacaatttgcatttatgctttatgctttatactgccttacccatggattcccacgaattgcaat |
41383177 |
T |
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| Q |
201 |
tcgacaaacaaaaacttaccttttgatttcttgtcatcatttgctgttaacaacactatgcaaatatgtatgatcaatttagtagccaaattgaccatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41383178 |
tcgacaaacaaaaacttaccttttgatttcttgtcatcatttgctgttaacaacactatgcaaatatgtatgatcaatttagtagccaaattgaccatta |
41383277 |
T |
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| Q |
301 |
ttttattccataattagatgtcgacactgactaaaaacagctataatcttatgcagttgcatattgatgtgaacggggttg |
381 |
Q |
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| T |
41383278 |
ttttattccataattaggtgtcgacactgactaaaaacagctataatcttatgcagttgcatattgatgtgaacggggttg |
41383358 |
T |
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