View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16821_low_9 (Length: 398)
Name: NF16821_low_9
Description: NF16821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16821_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 51398809 - 51399184
Alignment:
| Q |
1 |
atcacagaacaaacattgaaactttgaaccatccaagaaacaaaaacagaaccagcaaggaagagcatgtaacaacaactaccagatcactaccgaaacc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51398809 |
atcacagaacaaacattgaaactttgaatcatccaagaaacaaaaacagaaccagcaaggaagagcatgtaacaacaactaccagatcactaccgaaacc |
51398908 |
T |
|
| Q |
101 |
aattagcgagttagaggctagagc----tatatatataagaaaatttccatcgttcacacaaacaaatacttggtatatcttcaaacaatatagacttat |
196 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51398909 |
aattagcgagtttgaggctagagctatatatatatataagaaaatttccatcgttcacacaaacaaatacttagtatatcttcaaacaatatagacttat |
51399008 |
T |
|
| Q |
197 |
caaattacaatattatttttccttcaaaaaatatacagtctta--------ttttcttgttnnnnnnnnnnnntaattaatttctcaaaagcatgtgata |
288 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
51399009 |
caaattacaatattatttctccttcaaaaaatatacagtcttattttcttgttttcttgttaaaaagaaaaaataattaatttctcaaaagcatgtgata |
51399108 |
T |
|
| Q |
289 |
aattaatccactcactcttaaattttccacaatcttgtacgtgagtattcttcttaaattaataataaacagtaat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51399109 |
aattaatccactcactcttaaattttccacaatcttgtacgtgagtattcttcttaaattaataataaacagtaat |
51399184 |
T |
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