View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16822_low_2 (Length: 380)
Name: NF16822_low_2
Description: NF16822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16822_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 2714999 - 2715346
Alignment:
| Q |
18 |
atgcatgagattcaaagtcactacaaaattcattttcaccatattacattatgtttctatgaaccattccatgatatctagctacttgtgttgatgtcct |
117 |
Q |
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| T |
2714999 |
atgcatgagattcaaagtcactataaaattcattttcaccatattacattatgtttctatgaaccattccatgatatctagctacttgtgttgatgtcct |
2715098 |
T |
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| Q |
118 |
tctctaccttccttgtttttgttccgcatgtcttctacaacatgacttgatgccatattatttgagggtcccccaagccccaggcatgaggcaagccaat |
217 |
Q |
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| T |
2715099 |
tctctaccttccttgtttttgttccgcatgtcttctacaacatgacttgatgccatattatttgagggtcccccaagccccaggcatgagccaagccaat |
2715198 |
T |
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| Q |
218 |
tcgagacttcagccatctctctaggaactgtataatgaccaagcctacacaaaataacaagccaaaaagtgaaacaattgctttaactaatgttttaaaa |
317 |
Q |
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| T |
2715199 |
tggagacttcagccatctctctaggaactgtataatgaccaagcctacacaaaataacaagccaaaaagtgaaacaattgctttaactaatgttttaaaa |
2715298 |
T |
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| Q |
318 |
attagaccgaaccgatcaacaaatcaatttgtcggtcggttcaaatct |
365 |
Q |
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| T |
2715299 |
attagaccgaactgatcaacaaatcaatttgtcggtcggttcaaatct |
2715346 |
T |
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