View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16823_high_10 (Length: 404)
Name: NF16823_high_10
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 46504920 - 46505296
Alignment:
| Q |
12 |
ataggcttcacacaagaagaccaagtccaagtgcacaaaatggtgcaccagcagcacagttagtggttttaggaggaatatgggtcccaccagaatatgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46504920 |
ataggcttcacacaagaagaccaagtccaagtgcacaaaatggtgcaccagcagcacagttagtggttttaggaggaatatgggtcccaccagaatatgc |
46505019 |
T |
|
| Q |
112 |
aactgcagctcatgcaggaggaacacctactctctatggtggtcatcctacttctcatcatctcactctgccacattactgcactgcaccaggccaagat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46505020 |
aactgcagctcatgcaggaggaacacctactctctatggtggtcatcctacttctcatcatctcactctgccacattactgcactgcaccaggccaagat |
46505119 |
T |
|
| Q |
212 |
cagtactacactactgcaccgccgccgcagcagctacttccgccgcctcatcacatgcaccatgtctacaagaccacgccacatggacaaggttcaccgg |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46505120 |
cagtactacactactgcaccgccaccgcagcagctacttccgccgcctcatcacatgcaccatgtctacaagaccacgccacacggacaaggttcaccgg |
46505219 |
T |
|
| Q |
312 |
agacatgtggagacgggttggatagtatcgaaaatgggaagacatcggagagtagtagctggaaagaggggagttct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46505220 |
agacatgtggagacgggttggatagtatcgaaaatgggaagacatcggagagtagtagctggaaagaggggagttct |
46505296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University