View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16823_high_15 (Length: 352)
Name: NF16823_high_15
Description: NF16823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16823_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 43324763 - 43325083
Alignment:
| Q |
15 |
aatataggcacaattcacaaactgatctccagccacagggtaacacaacaatttctttttgaattgtaaagcttccaatgtagaattccaaccacaatga |
114 |
Q |
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| T |
43324763 |
aatataggcacaattcacaaactgatctccagccacagggtaacacaacaatttcttttggaattgtaaagcttccaatgtagaattccaaccacaatga |
43324862 |
T |
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| Q |
115 |
gtgataaaacaacctacagaattgtgttgcaaaatctctttttgtggtgcccaagaaacaaccaatcctttcccttgcttgaaaatcctctccaaaaacc |
214 |
Q |
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| T |
43324863 |
gtgataaaacaacctacagaattgtgttccaaaatctctttttgtggggcccaagaaacaaccaatcctttcccttgcttgaaaatcctctccaaaaacc |
43324962 |
T |
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| Q |
215 |
caattggtaacccttgacgccaagaagacctcaaaacccaaatgaaaggtctcattgtagcctcaagagccaatgctagattcttcaaatttgattcacc |
314 |
Q |
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| T |
43324963 |
caattggtaacccttgacgccaagaagacctcaaaacccaaatgaaaggtctcattgtagcctcaagagccaatgctagattcttcaaatttgattcacc |
43325062 |
T |
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| Q |
315 |
aattggattgacccaacttcc |
335 |
Q |
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| T |
43325063 |
aattggattgacccaacttcc |
43325083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 30817184 - 30817232
Alignment:
| Q |
82 |
aaagcttccaatgtagaattccaaccacaatgagtgataaaacaaccta |
130 |
Q |
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| T |
30817184 |
aaagcttccaatgtggaattccaaccacaatgtgttacaaaacacccta |
30817232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 30858645 - 30858693
Alignment:
| Q |
82 |
aaagcttccaatgtagaattccaaccacaatgagtgataaaacaaccta |
130 |
Q |
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| T |
30858645 |
aaagcttccaatgtggaattccaaccacaatgtgttacaaaacacccta |
30858693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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